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      Host Infection beyond the Traditional Range of Sclerotium (Athelia) rolfsii with Physalis minima

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          Abstract

          Physalis minima is an herbaceous plant and inhabitant of the porous and organic matter containing soil of bunds in crop fields, wastelands, around the houses, and on the roadsides. S. rolfsii is soil borne and it can infect over 500 plant species of different families. It is of interest to study the pathogenesis of S. rolfsii on P. minima. The S. rolfsii isolated from P. minima (physr1) was characterized by morphology and sequence of Internal Transcribed Spacer (ITS) region. The population structure determination and phylogenetic analysis showed the isolate physr1 significantly differs from other isolates. The null hypothesis of equal evolutionary rate was rejected throughout the Maximum likelihood (ML) tree topology of different S. rolfsii ITS sequences. The site-specific mean (relative) evolutionary rate analysis showed that most of the sites (80.59 % sites) evolved at a slower rate than average. Finally, the result of Tajima's neutrality test indicated that the population of S. rolfsii has recently begun to expand and that's why the pathogen was infecting the new host P. minima and pose a serious threat of infecting several other cropped and non-cropped hosts.

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          Most cited references12

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          Oxford University Press, New York.

          M Nei, S KUmar (2000)
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            W Chen (1994)
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                Author and article information

                Journal
                Bioinformation
                Bioinformation
                Bioinformation
                Bioinformation
                Biomedical Informatics
                0973-2063
                2017
                31 October 2017
                : 13
                : 10
                : 333-338
                Affiliations
                [1 ]Department of Plant Protection, PSB, Visva-Bharati, Sreeniketan, Birbhum, West Bengal, India
                [2 ]AICRP on Vegetable crops, Directorate of Research, B.C.K.V, Kalyani, Nadia, West Bengal, India
                [3 ]Centre for Bioinformatics, Pondicherry University, Pondicherry-605 014, India
                Author notes
                [* ]Subrata Dutta subrata_mithu@ 123456yahoo.co.in Tel: +9476272646
                Article
                97320630013333
                10.6026/97320630013333
                5680714
                2a0de304-4566-48fa-8fd0-f36ee574498c
                © 2017 Biomedical Informatics

                This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.

                History
                : 4 August 2017
                : 21 August 2017
                : 21 August 2017
                Categories
                Hypothesis

                Bioinformatics & Computational biology
                physalis minima,sclerotium rolfsii,internal transcribed spacer region,molecular clock,site specific evolutionary rate,kc543584

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