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      Molecular discrimination of Opisthorchis-like eggs from residents in a rural community of central Thailand

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          Abstract

          Background

          Opisthorchis viverrini infection is a major public health problem in northern and northeastern Thailand. The chronic infection of O. viverrini is related to cholangiocarcinoma which causes high mortality in endemic areas. Therefore, the diagnosis, treatment, control and prevention of O. viverrini infection are necessary. The morphology of the egg is very similar to that of other species of human liver flukes ( Opisthorchis felineus and Clonorchis sinensis) as well as that of small intestinal flukes in the family Heterophyidae. Thus, molecular characterization is crucially required to discriminate species of Opisthorchis-like eggs in fecal examination.

          Methodology/Principal findings

          We aimed to determine the prevalence of O. viverrini infection among villagers living in Sanamchaikate District, Chachoengsao Province, in central Thailand, where O. viverrini infection has previously been reported. A total of 2,609 fecal samples were examined for Opisthorchis-like eggs using microscopic examination. PCR-RFLP analysis of the ITS2 region was used to discriminate Opisthorchis-like eggs. The genetic structure of O. viverrini infection was demonstrated using nucleotide sequencing of cytochrome c oxidase subunit I ( cox1) and NADH dehydrogenase subunit 1 ( nad1). Testing of evolutionary neutrality of the cox1 and nad1 sequences of O. viverrini was performed using Tajima's D tests and Fu's Fs tests. Moreover, the haplotype networks and phylogenetic trees were constructed to study the relationships of O. viverrini isolated from different endemic areas. A high prevalence of O. viverrini infection is still observed in a rural community of Chachoengsao Province, central Thailand. The overall prevalence of Opisthorchis-like eggs using microscopic examination was 16.8%. PCR-RFLP profiles showed the predominant infection of O. viverrini (9.6%) including very low infections of other small intestinal flukes, Haplorchis taichui (0.08%) and Euparyphium albuferensis (0.08%). The genetic structure of O. viverrini populations in central Thailand was also described and revealed a non-significant difference in genetic diversity. In addition, the genetic background of the O. viverrini populations was closely related to the isolate from Lao PDR.

          Conclusions/Significance

          Our study highlighted the prevalence of O. viverrini infection in central Thailand indicating that control programs and health education regarding opisthorchiasis is still required in this endemic area. Additionally, the study demonstrated the genetic structure of O. viverrini, in central Thailand which could provide information on the molecular epidemiology of this parasite.

          Author summary

          O. viverrini infection is highly prevalent in northern and northeastern Thailand. The diagnosis of the infection is usually achieved by finding the eggs in feces. However, these eggs are difficult to differentiate morphologically from other Opisthorchis-like eggs. Our study evaluated the prevalence and molecular characterization of Opisthorchis-like eggs in fecal samples collected from 2,609 villagers living in a rural community, in central Thailand, using PCR-RFLP analysis of ITS2 region. This study insists that Sanamchaikate District, Chachoengsao Province, central area, is one of the areas for O. viverrini infection. To understand the transmission dynamics of O. viverrini in the study area, the genetic structure of O. viverrini was also assessed using cox1 and nad1 sequences. The O. viverrini populations showed monophyly and the genetic background was closely related to one isolate from Lao PDR.

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          Most cited references47

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          DnaSP, DNA polymorphism analyses by the coalescent and other methods.

          DnaSP is a software package for the analysis of DNA polymorphism data. Present version introduces several new modules and features which, among other options allow: (1) handling big data sets (approximately 5 Mb per sequence); (2) conducting a large number of coalescent-based tests by Monte Carlo computer simulations; (3) extensive analyses of the genetic differentiation and gene flow among populations; (4) analysing the evolutionary pattern of preferred and unpreferred codons; (5) generating graphical outputs for an easy visualization of results. The software package, including complete documentation and examples, is freely available to academic users from: http://www.ub.es/dnasp
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            • Article: not found

            Food-borne trematodiases in Southeast Asia epidemiology, pathology, clinical manifestation and control.

            The food-borne trematodiases are an important group of neglected tropical diseases (NTDs). Over 40 million people are infected with food-borne trematodes and 750 million (>10% of the world's population) are at risk of these NTDs. Here, we review the life cycles, epidemiology, clinical manifestations, pathology and pathogenesis, diagnosis, treatment, and prevention and control of the major food-borne trematodiases in Southeast Asia. We focus particularly on opisthorchiasis caused by Opisthorchis viverrini and clonorchiasis caused by Clonorchis sinensis, which people contract by ingestion of metacercariae in flesh of raw or undercooked freshwater fishes, on fascioliasis caused by Fasciola species, where infection arises from ingestion of metacercariae on water plants such as watercress, and on Paragonimus species, the lung flukes, which use freshwater crabs and other crustaceans as intermediate hosts. We also include information on the intestinal flukes Fasciolopsis buski, the echinostomes and the so-called 'minute intestinal flukes' of the family Heterophyidae. Ecological information, placing emphasis on reservoir hosts, intermediate snail hosts and secondary hosts where applicable, is also reviewed and research needs are highlighted.
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              Prevalence of Opisthorchis viverrini infection and incidence of cholangiocarcinoma in Khon Kaen, Northeast Thailand.

              Liver cancer is the most common cancer in Khon Kaen, Northeast Thailand, because of the high incidence of cholangiocarcinoma (CHCA). Opisthorchis viverrini (OV), a liver fluke, is endemic in the area, and has been evaluated as a cause of CHCA by International Agency for Research on Cancer. Residents of 20 districts in the province were invited to attend a mobile screening programme between 1990 and 2001. Of 24 723 participants, 18 393 aged 35-69 years were tested for OV infection, by examining stools for the presence of eggs. Prevalence of infection in each district was estimated from the sample of the population who had been tested. The incidence of liver cancer in 1990-2001 was obtained for each district from the cancer registry. The average crude prevalence of OV infection in the sample subjects was 24.5%, ranging from 2.1% to 70.8% in different districts. Truncated age-standardized incidence of CHCA at ages >35 years varied threefold between districts, from 93.8 to 317.6 per 100,000 person-years. After adjustment for age group, sex and period of sampling, there was a positive association between prevalence of OV infection and incidence of CHCA at the population level. Associations between CHCA and active OV infection in individuals have become hard to demonstrate, because of effective anti-OV treatment. The relationship may, however, be clear in comparisons between populations, which, for infectious diseases, take into account the contextual effects of group exposure in determining individual outcome. The cancer registry is an appropriate tool for disease monitoring in small areas.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SoftwareRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: SoftwareRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: MethodologyRole: VisualizationRole: Writing – review & editing
                Role: MethodologyRole: VisualizationRole: Writing – review & editing
                Role: MethodologyRole: VisualizationRole: Writing – review & editing
                Role: Funding acquisitionRole: MethodologyRole: VisualizationRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SoftwareRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                plosntds
                PLoS Neglected Tropical Diseases
                Public Library of Science (San Francisco, CA USA )
                1935-2727
                1935-2735
                2 November 2017
                November 2017
                : 11
                : 11
                : e0006030
                Affiliations
                [1 ] Department of Microbiology, Faculty of Science, Mahidol University, Bangkok, Thailand
                [2 ] Department of Parasitology, Phramongkutklao College of Medicine, Ratchathewi, Bangkok, Thailand
                Istituto Superiore di Sanità, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-2494-7448
                Article
                PNTD-D-17-01246
                10.1371/journal.pntd.0006030
                5685638
                29095828
                d25b893f-24ff-4f85-8a12-1e3356ec3995
                © 2017 Buathong et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 4 August 2017
                : 11 October 2017
                Page count
                Figures: 5, Tables: 3, Pages: 17
                Funding
                Funded by: The Royal Golden Jubilee Ph.D. Programme
                Award ID: PHD/1076/2552
                Award Recipient :
                Funded by: Thailand Research Fund (TRF)
                Award ID: Grant No. PHD/1076/2552
                Award Recipient :
                Funded by: The Royal Golden Jubilee Ph.D. Programme
                Award ID: PHD/1076/2552
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100004396, Thailand Research Fund;
                Award ID: Grant No. PHD/1076/2552
                Award Recipient :
                Funded by: Phramongkutklao Research Fund
                Award Recipient :
                This work received financial support from The Royal Golden Jubilee Ph.D. Programme (Grant No. PHD/1076/2552), Thailand Research Fund (TRF)(Grant No. PHD/1076/2552) and Phramongkutklao Research Fund. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Genetics
                Heredity
                Genetic Mapping
                Haplotypes
                Biology and Life Sciences
                Evolutionary Biology
                Population Genetics
                Biology and Life Sciences
                Genetics
                Population Genetics
                Biology and Life Sciences
                Population Biology
                Population Genetics
                Biology and Life Sciences
                Molecular Biology
                Molecular Biology Techniques
                Artificial Gene Amplification and Extension
                Polymerase Chain Reaction
                Research and Analysis Methods
                Molecular Biology Techniques
                Artificial Gene Amplification and Extension
                Polymerase Chain Reaction
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Invertebrates
                Helminths
                Trematodes
                Opisthorchis
                Opisthorchis Viverrini
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Invertebrates
                Flatworms
                Trematodes
                Opisthorchis
                Opisthorchis Viverrini
                People and Places
                Geographical Locations
                Asia
                Thailand
                Research and analysis methods
                Database and informatics methods
                Bioinformatics
                Sequence analysis
                DNA sequence analysis
                Biology and Life Sciences
                Evolutionary Biology
                Evolutionary Systematics
                Phylogenetics
                Phylogenetic Analysis
                Biology and Life Sciences
                Taxonomy
                Evolutionary Systematics
                Phylogenetics
                Phylogenetic Analysis
                Computer and Information Sciences
                Data Management
                Taxonomy
                Evolutionary Systematics
                Phylogenetics
                Phylogenetic Analysis
                Biology and Life Sciences
                Ecology
                Ecological Metrics
                Species Diversity
                Ecology and Environmental Sciences
                Ecology
                Ecological Metrics
                Species Diversity
                Custom metadata
                vor-update-to-uncorrected-proof
                2017-11-14
                All relevant data are within the paper and its Supporting Information files. All sequence data is available through GenBank data base with the following accession numbers, cox1 sequences: EU022353.1, EU022351.1, EU022354.1, EU022356.1, EU022355.1, EU022360.1, EU022364.1, EU022363.1, EU022362.1, EU022352.1, EU022357.1, EU022358.1, EU022359.1, JF739555.1 and JN936215.1 nad1 sequences: EU022338.1, EU022344.1, EU022349.1, EU022346.1, EU022345.1, EU022348.1, EU022350.1, EU022343.1, EU0222334.1, EU022337.1, EU022342.1, EU022339.1, EU022347.1, JF739555.1, DQ119551.1, EU022340.1, GQ401040.1, DQ882172.1, EU443831.1, DQ882175.1, DQ882173.1, EU443833.1, EU443832.1, DQ882174.1, GQ401082.1 and JF729304.1.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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