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      Solving the nuclear pore puzzle

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      Science
      American Association for the Advancement of Science (AAAS)

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          Abstract

          Using a battery of tools, the architecture of the nuclear pore complex is revealed

          Abstract

          In eukaryotic cells, the genome is sequestered in the nucleus, shielded from the cytoplasm by the double-layered nuclear envelope (NE). Transport of macromolecules across the NE occurs through nuclear pore complexes (NPCs), which perforate the NE at ∼200 to 2000 positions ( 1 3 ). Ions and molecules up to ∼40 kDa diffuse through NPCs, whereas larger cargo selectively associate with soluble nuclear transport factors to be ferried through the central NPC channel ( 4 ). But it has been unclear how NPCs exactly control the transport of a vast array of different substrates, including soluble proteins, embedded membrane proteins, RNAs, and even some viral capsids. On pages 1174, 1175, 1176, 1177, and 1178 of this issue, Bley et al.( 5 ), Petrovic et al.( 6 ), Mosalaganti et al.( 7 ), Zhu et al.( 8 ), and Fontana et al.( 9 ), respectively, now provide molecular structures, in unprecedented detail, of how NPCs are built. These findings will enable approaches to further dissect the many NPC functions.

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          Most cited references14

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          The Structure of the Nuclear Pore Complex (An Update)

          The nuclear pore complex (NPC) serves as the sole bidirectional gateway of macromolecules in and out of the nucleus. Owing to its size and complexity (∼1,000 protein subunits, ∼110 MDa in humans), the NPC has remained one of the foremost challenges for structure determination. Structural studies have now provided atomic-resolution crystal structures of most nucleoporins. The acquisition of these structures, combined with biochemical reconstitution experiments, cross-linking mass spectrometry, and cryo–electron tomography, has facilitated the determination of the near-atomic overall architecture of the symmetric core of the human, fungal, and algal NPCs. Here, we discuss the insights gained from these new advances and outstanding issues regarding NPC structure and function. The powerful combination of bottom-up and top-down approaches toward determining the structure of the NPC offers a paradigm for uncovering the architectures of other complex biological machines to near-atomic resolution.
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            The Nuclear Pore Complex as a Flexible and Dynamic Gate.

            Nuclear pore complexes (NPCs) perforate the nuclear envelope and serve as the primary transport gates for molecular exchange between nucleus and cytoplasm. Stripping the megadalton complex down to its most essential organizational elements, one can divide the NPC into scaffold components and the disordered elements attached to them that generate a selective barrier between compartments. These structural elements exhibit flexibility, which may hold a clue in understanding NPC assembly and function. Here we review the current status of NPC research with a focus on the functional implications of its structural and compositional heterogeneity.
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              Transport Selectivity of Nuclear Pores, Phase Separation, and Membraneless Organelles.

              Nuclear pore complexes (NPCs) provide a selective passageway for receptor-mediated active transport between nucleus and cytoplasm, while maintaining the distinct molecular compositions of both compartments at large. In this review we discuss how NPCs gain a remarkable sorting selectivity from non-globular FG domains and their phase separation into dense polymer meshworks. The resulting sieve-like FG hydrogels are effective barriers to normal macromolecules but are at the same time highly permeable to shuttling nuclear transport receptors, which bind to FG motifs as well as to their designated cargoes. Phase separation driven by disordered protein domains was recently also recognized as being pivotal to the formation of membraneless organelles, making it an important emerging principle in cell biology.
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                Author and article information

                Journal
                Science
                Science
                American Association for the Advancement of Science (AAAS)
                0036-8075
                1095-9203
                June 10 2022
                June 10 2022
                : 376
                : 6598
                : 1158-1159
                Affiliations
                [1 ]Massachusetts Institute of Technology, Department of Biology, Cambridge, MA, USA.
                Article
                10.1126/science.abq4792
                35679398
                f1d56d03-4612-411e-8708-3679b116ed4f
                © 2022
                History

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