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      Endogenous Tagging Reveals Differential Regulation of Ca 2+ Channels at Single Active Zones during Presynaptic Homeostatic Potentiation and Depression

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          Abstract

          Neurons communicate through Ca 2+-dependent neurotransmitter release at presynaptic active zones (AZs). Neurotransmitter release properties play a key role in defining information flow in circuits and are tuned during multiple forms of plasticity. Despite their central role in determining neurotransmitter release properties, little is known about how Ca 2+ channel levels are modulated to calibrate synaptic function. We used CRISPR to tag the Drosophila Ca V2 Ca 2+ channel Cacophony (Cac) and, in males in which all Cac channels are tagged, investigated the regulation of endogenous Ca 2+ channels during homeostatic plasticity. We found that heterogeneously distributed Cac is highly predictive of neurotransmitter release probability at individual AZs and differentially regulated during opposing forms of presynaptic homeostatic plasticity. Specifically, AZ Cac levels are increased during chronic and acute presynaptic homeostatic potentiation (PHP), and live imaging during acute expression of PHP reveals proportional Ca 2+ channel accumulation across heterogeneous AZs. In contrast, endogenous Cac levels do not change during presynaptic homeostatic depression (PHD), implying that the reported reduction in Ca 2+ influx during PHD is achieved through functional adaptions to pre-existing Ca 2+ channels. Thus, distinct mechanisms bidirectionally modulate presynaptic Ca 2+ levels to maintain stable synaptic strength in response to diverse challenges, with Ca 2+ channel abundance providing a rapidly tunable substrate for potentiating neurotransmitter release over both acute and chronic timescales.

          SIGNIFICANCE STATEMENT Presynaptic Ca 2+ dynamics play an important role in establishing neurotransmitter release properties. Presynaptic Ca 2+ influx is modulated during multiple forms of homeostatic plasticity at Drosophila neuromuscular junctions to stabilize synaptic communication. However, it remains unclear how this dynamic regulation is achieved. We used CRISPR gene editing to endogenously tag the sole Drosophila Ca 2+ channel responsible for synchronized neurotransmitter release, and found that channel abundance is regulated during homeostatic potentiation, but not homeostatic depression. Through live imaging experiments during the adaptation to acute homeostatic challenge, we visualize the accumulation of endogenous Ca 2+ channels at individual active zones within 10 min. We propose that differential regulation of Ca 2+ channels confers broad capacity for tuning neurotransmitter release properties to maintain neural communication.

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          Detecting outliers: Do not use standard deviation around the mean, use absolute deviation around the median

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            Optimization of a GCaMP calcium indicator for neural activity imaging.

            Genetically encoded calcium indicators (GECIs) are powerful tools for systems neuroscience. Recent efforts in protein engineering have significantly increased the performance of GECIs. The state-of-the art single-wavelength GECI, GCaMP3, has been deployed in a number of model organisms and can reliably detect three or more action potentials in short bursts in several systems in vivo. Through protein structure determination, targeted mutagenesis, high-throughput screening, and a battery of in vitro assays, we have increased the dynamic range of GCaMP3 by severalfold, creating a family of "GCaMP5" sensors. We tested GCaMP5s in several systems: cultured neurons and astrocytes, mouse retina, and in vivo in Caenorhabditis chemosensory neurons, Drosophila larval neuromuscular junction and adult antennal lobe, zebrafish retina and tectum, and mouse visual cortex. Signal-to-noise ratio was improved by at least 2- to 3-fold. In the visual cortex, two GCaMP5 variants detected twice as many visual stimulus-responsive cells as GCaMP3. By combining in vivo imaging with electrophysiology we show that GCaMP5 fluorescence provides a more reliable measure of neuronal activity than its predecessor GCaMP3. GCaMP5 allows more sensitive detection of neural activity in vivo and may find widespread applications for cellular imaging in general.
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              Highly Specific and Efficient CRISPR/Cas9-Catalyzed Homology-Directed Repair in Drosophila

              We and others recently demonstrated that the readily programmable CRISPR/Cas9 system can be used to edit the Drosophila genome. However, most applications to date have relied on aberrant DNA repair to stochastically generate frameshifting indels and adoption has been limited by a lack of tools for efficient identification of targeted events. Here we report optimized tools and techniques for expanded application of the CRISPR/Cas9 system in Drosophila through homology-directed repair (HDR) with double-stranded DNA (dsDNA) donor templates that facilitate complex genome engineering through the precise incorporation of large DNA sequences, including screenable markers. Using these donors, we demonstrate the replacement of a gene with exogenous sequences and the generation of a conditional allele. To optimize efficiency and specificity, we generated transgenic flies that express Cas9 in the germline and directly compared HDR and off-target cleavage rates of different approaches for delivering CRISPR components. We also investigated HDR efficiency in a mutant background previously demonstrated to bias DNA repair toward HDR. Finally, we developed a web-based tool that identifies CRISPR target sites and evaluates their potential for off-target cleavage using empirically rooted rules. Overall, we have found that injection of a dsDNA donor and guide RNA-encoding plasmids into vasa-Cas9 flies yields the highest efficiency HDR and that target sites can be selected to avoid off-target mutations. Efficient and specific CRISPR/Cas9-mediated HDR opens the door to a broad array of complex genome modifications and greatly expands the utility of CRISPR technology for Drosophila research.
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                Author and article information

                Journal
                J Neurosci
                J. Neurosci
                jneuro
                jneurosci
                J. Neurosci
                The Journal of Neuroscience
                Society for Neuroscience
                0270-6474
                1529-2401
                27 March 2019
                27 March 2019
                : 39
                : 13
                : 2416-2429
                Affiliations
                [1] 1Department of Neuroscience,
                [2] 2Carney Institute for Brain Science, Brown University, Providence, Rhode Island 02912,
                [3] 3Department of Neurobiology, University of Southern California, Los Angeles, California 90089,
                [4] 4Laboratory of Cell and Molecular Biology, University of Wisconsin-Madison, Madison, WI 53706,
                [5] 5Department of Biological Sciences and Wilkes Honors College, Florida Atlantic University, Jupiter, Florida 33458, and
                [6] 6Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI 53706
                Author notes
                Correspondence should be addressed to Kate M. O'Connor-Giles at oconnorgiles@ 123456brown.edu

                Author contributions: S.J.G., P.G., J.J.B., G.T.M., D.D., and K.M.O.-G. edited the paper; S.J.G., P.G., J.J.B., G.T.M., D.D., and K.M.O.-G. designed research; S.J.G., P.G., J.J.B., R.X.H., K.K., G.T.M., and K.M.O.-G. performed research; S.J.G., P.G., J.J.B., R.X.H., K.K., G.T.M., D.D., and K.M.O.-G. analyzed data; S.J.G. and K.M.O.-G. wrote the paper.

                J. J. Bruckner's present address: Institute of Neuroscience, University of Oregon, Eugene, OR 97401.

                K. Khateeb's present address: Department of Bioengineering, University of Washington, Seattle, WA 98105.

                Author information
                https://orcid.org/0000-0002-0106-8336
                https://orcid.org/0000-0002-6348-4909
                https://orcid.org/0000-0001-8852-9440
                https://orcid.org/0000-0001-9875-3243
                https://orcid.org/0000-0003-3005-2197
                https://orcid.org/0000-0003-3782-6968
                https://orcid.org/0000-0003-1884-284X
                https://orcid.org/0000-0002-2259-8408
                Article
                3068-18
                10.1523/JNEUROSCI.3068-18.2019
                6435823
                30692227
                e692ba55-88e1-41f6-b982-90f7e4c15d79
                Copyright © 2019 Gratz et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License Creative Commons Attribution 4.0 International, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

                History
                : 3 December 2018
                : 14 January 2019
                : 21 January 2019
                Categories
                Research Articles
                Development/Plasticity/Repair
                Custom metadata
                true
                cellular

                synapse,calcium channels,drosophila,gene editing,homeostatic plasticity,neurotransmitter release

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