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      Apseudes ranma sp. nov. (Tanaidacea: Apseudidae) found in a public aquarium, with notes on phylogeny and a presumptive stridulatory organ

      1 , 2
      Bulletin of Marine Science
      Bulletin of Marine Science

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          Abstract

          We describe Apseudes ranma sp. nov. from the Port of Nagoya Public Aquarium, Nagoya, Japan. It resembles two congeners, Apseudes curtiramus (Guţu, 2007) and Apseudes orghidani Guţu and Iliffe, 1989, in having the rostrum triangular, wider than long, the carapace without lateral spines, distinct and round eye lobes, pereonites 3–6 with a pair of tongue-shaped anterolateral projections, and the pleotelson with two pairs of lateral projections, but differs from them in having lateral setae on the anterolateral margin of the carapace and a ventro-subproximal spine on the pereopod-1 basis, and in the number of spiniform setae on articles of pereopods 2–4. We determined partial nucleotide sequences for the cytochrome c oxidase subunit I (COI) and 18S rRNA (18S) genes in A. ranma sp. nov. for future DNA barcoding and phylogeny reconstruction. In an 18S tree, A. ranma sp. nov. was the sister taxon to Apseudes nipponicus Shiino, 1937, and this clade was the sister group to moderately supported Carpoapseudes clade. We discovered a presumptive stridulatory organ in A. ranma sp. nov. consisting of a cylindrical protrusion and knobbly area on the inner surface of each of the left and right chelipedal bases. The location of the protrusion and knobbly area suggests that these may be a plectrum and pars stridens, respectively.

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          MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

          We present the latest version of the Molecular Evolutionary Genetics Analysis (Mega) software, which contains many sophisticated methods and tools for phylogenomics and phylomedicine. In this major upgrade, Mega has been optimized for use on 64-bit computing systems for analyzing larger datasets. Researchers can now explore and analyze tens of thousands of sequences in Mega The new version also provides an advanced wizard for building timetrees and includes a new functionality to automatically predict gene duplication events in gene family trees. The 64-bit Mega is made available in two interfaces: graphical and command line. The graphical user interface (GUI) is a native Microsoft Windows application that can also be used on Mac OS X. The command line Mega is available as native applications for Windows, Linux, and Mac OS X. They are intended for use in high-throughput and scripted analysis. Both versions are available from www.megasoftware.net free of charge.
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            A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

            Some simple formulae were obtained which enable us to estimate evolutionary distances in terms of the number of nucleotide substitutions (and, also, the evolutionary rates when the divergence times are known). In comparing a pair of nucleotide sequences, we distinguish two types of differences; if homologous sites are occupied by different nucleotide bases but both are purines or both pyrimidines, the difference is called type I (or "transition" type), while, if one of the two is a purine and the other is a pyrimidine, the difference is called type II (or "transversion" type). Letting P and Q be respectively the fractions of nucleotide sites showing type I and type II differences between two sequences compared, then the evolutionary distance per site is K = -(1/2) ln [(1-2P-Q) square root of 1-2Q]. The evolutionary rate per year is then given by k = K/(2T), where T is the time since the divergence of the two sequences. If only the third codon positions are compared, the synonymous component of the evolutionary base substitutions per site is estimated by K'S = -(1/2) ln (1-2P-Q). Also, formulae for standard errors were obtained. Some examples were worked out using reported globin sequences to show that synonymous substitutions occur at much higher rates than amino acid-altering substitutions in evolution.
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              Proposed New Standardized Anatomical Terminology for the Tanaidacea (Peracarida)

              Kim Larsen (2003)
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                Author and article information

                Journal
                Bulletin of Marine Science
                bms
                Bulletin of Marine Science
                0007-4977
                July 01 2024
                July 01 2024
                : 100
                : 3
                : 451-470
                Affiliations
                [1 ]Department of Natural History Sciences, Graduate School of Science, Hokkaido University, Sapporo 060- 0810, Japan
                [2 ]Department of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
                Article
                10.5343/bms.2024.0030
                8dd69fd2-7045-4fb5-8d95-14485eb82358
                © 2024
                History

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