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      Ferns: the missing link in shoot evolution and development

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          Abstract

          Shoot development in land plants is a remarkably complex process that gives rise to an extreme diversity of forms. Our current understanding of shoot developmental mechanisms comes almost entirely from studies of angiosperms (flowering plants), the most recently diverged plant lineage. Shoot development in angiosperms is based around a layered multicellular apical meristem that produces lateral organs and/or secondary meristems from populations of founder cells at its periphery. In contrast, non-seed plant shoots develop from either single apical initials or from a small population of morphologically distinct apical cells. Although developmental and molecular information is becoming available for non-flowering plants, such as the model moss Physcomitrella patens, making valid comparisons between highly divergent lineages is extremely challenging. As sister group to the seed plants, the monilophytes (ferns and relatives) represent an excellent phylogenetic midpoint of comparison for unlocking the evolution of shoot developmental mechanisms, and recent technical advances have finally made transgenic analysis possible in the emerging model fern Ceratopteris richardii. This review compares and contrasts our current understanding of shoot development in different land plant lineages with the aim of highlighting the potential role that the fern C. richardii could play in shedding light on the evolution of underlying genetic regulatory mechanisms.

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          The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.

          We report the draft genome sequence of the model moss Physcomitrella patens and compare its features with those of flowering plants, from which it is separated by more than 400 million years, and unicellular aquatic algae. This comparison reveals genomic changes concomitant with the evolutionary movement to land, including a general increase in gene family complexity; loss of genes associated with aquatic environments (e.g., flagellar arms); acquisition of genes for tolerating terrestrial stresses (e.g., variation in temperature and water availability); and the development of the auxin and abscisic acid signaling pathways for coordinating multicellular growth and dehydration response. The Physcomitrella genome provides a resource for phylogenetic inferences about gene function and for experimental analysis of plant processes through this plant's unique facility for reverse genetics.
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            The stem cell population of Arabidopsis shoot meristems in maintained by a regulatory loop between the CLAVATA and WUSCHEL genes.

            The higher-plant shoot meristem is a dynamic structure whose maintenance depends on the coordination of two antagonistic processes, organ initiation and self-renewal of the stem cell population. In Arabidopsis shoot and floral meristems, the WUSCHEL (WUS) gene is required for stem cell identity, whereas the CLAVATA1, 2, and 3 (CLV) genes promote organ initiation. Our analysis of the interactions between these key regulators indicates that (1) the CLV genes repress WUS at the transcript level and that (2) WUS expression is sufficient to induce meristem cell identity and the expression of the stem cell marker CLV3. Our data suggest that the shoot meristem has properties of a self-regulatory system in which WUS/CLV interactions establish a feedback loop between the stem cells and the underlying organizing center.
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              A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis.

              The KNOTTED class of plant genes encodes homeodomain proteins. These genes have been found in all plant species where they have been sought and, where examined, show expression patterns that suggest they play an important role in shoot meristem function. Until now, all mutant phenotypes associated with these genes have been due to gain-of-function mutations, making it difficult to deduce their wild-type function. Here we present evidence that the Arabidopsis SHOOT-MERISTEMLESS (STM) gene, required for shoot apical meristem formation during embryogenesis, encodes a class I KNOTTED-like protein. We also describe the expression pattern of this gene in the wild-type plant. To our knowledge, STM is the first gene shown to mark a specific pattern element in the developing plant embryo both phenotypically and molecularly.
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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                06 November 2015
                2015
                : 6
                : 972
                Affiliations
                [1] 1Department of Plant Sciences, University of Oxford Oxford, UK
                [2] 2Department of Biology, University of Washington Seattle, WA, USA
                Author notes

                Edited by: Catherine Anne Kidner, University of Edinburgh, UK

                Reviewed by: John Bowman, Monash University, Australia; Neelima Roy Sinha, University of California, Davis, USA; Jo Ann Banks, Purdue University, USA

                *Correspondence: Andrew R. G. Plackett, andrew.plackett@ 123456plants.ox.ac.uk

                This article was submitted to Plant Evolution and Development, a section of the journal Frontiers in Plant Science

                Article
                10.3389/fpls.2015.00972
                4635223
                26594222
                7ce63eb8-a691-477c-8355-9f48c28018dc
                Copyright © 2015 Plackett, Di Stilio and Langdale.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 29 August 2015
                : 23 October 2015
                Page count
                Figures: 4, Tables: 0, Equations: 0, References: 189, Pages: 19, Words: 0
                Funding
                Funded by: European Research Council 10.13039/501100000781
                Award ID: AdG-EDIP
                Funded by: Gatsby Charitable Foundation 10.13039/501100000324
                Funded by: Royalty Research Fund
                Funded by: National Science Foundation 10.13039/100000001
                Award ID: IOS-1121669
                Categories
                Plant Science
                Review

                Plant science & Botany
                plant,evolution,development,shoot,monilophyte,fern,ceratopteris
                Plant science & Botany
                plant, evolution, development, shoot, monilophyte, fern, ceratopteris

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