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      Molecular, chromosomal, and morphological evidence reveals a new allotetraploid fern species of Asplenium (Aspleniaceae) from southern Jiangxi, China

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          Abstract

          Asplenium jiulianshanense , a new tetraploid fern species of the A. normale complex ( Aspleniaceae ) from Jiulianshan National Nature Reserve, southern Jiangxi, China is described and illustrated. We inferred the phylogenetic position of the new species based on sequences from seven plastid markers ( atpB, rbcL, rps4, rps4-trnS, trnL, trnL-F, and trnG) and one low-copy nuclear gene, pgiC. The plastid phylogeny supported a close relationship among the new species A. jiulianshanense , A. minutifolium , and A. kiangsuense , while the nuclear phylogeny differed in topology from the plastid tree. The new species may be due to hybridization between A. kiangsuense and A. boreale . Morphologically, the new species can easily be distinguished from other members of the A. normale complex by rachises bearing a gemma near the apex, pinna margins entire to sparsely crenate, and (1‒)3‒4(‒6) sori per pinna.

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          MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

          We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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            jModelTest 2: more models, new heuristics and parallel computing.

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              MrBayes 3: Bayesian phylogenetic inference under mixed models.

              MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types-e.g. morphological, nucleotide, and protein-and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
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                Author and article information

                Contributors
                Journal
                PhytoKeys
                PhytoKeys
                3
                urn:lsid:arphahub.com:pub:F7FCE910-8E78-573F-9C77-7788555F8AAD
                PhytoKeys
                Pensoft Publishers
                1314-2011
                1314-2003
                2022
                09 June 2022
                : 199
                : 113-127
                Affiliations
                [1 ] Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 510275, China
                [2 ] Jiulianshan National Nature Reserve Administrative Bureau, Longnan, 341700, China
                [3 ] State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
                [4 ] Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
                Author notes
                Corresponding authors: Ke-Wang Xu ( xukw10@ 123456njfu.edu.cn ); Wen-Bo Liao ( lsslwb@ 123456mail.sysu.edu.cn )

                Academic editor: Joel Nitta

                Author information
                https://orcid.org/0000-0003-2239-0487
                Article
                81292
                10.3897/phytokeys.199.81292
                9849027
                36761876
                bbc4701f-9c87-47b5-9889-c04e7a17c9b1
                Chen-Xue Lin, Guo-Liang Xu, Zhi-Fang Jin, Wen-Bo Liao, Ke-Wang Xu

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 27 January 2022
                : 18 May 2022
                Funding
                the National Natural Science Foundation of China (#32100167), the Natural Science Foundation of Jiangsu Province (#BK20210612), the Nanjing Forestry University project funding (#163108093), the second phase of scientific expedition of Jiulianshan National Nature Reserve (#202102220001), and the Basic Work Special Project of the National Ministry of Science and Technology of China (#2013FY111500)
                Categories
                Research Article
                Aspleniaceae
                Taxonomy
                Asia

                Plant science & Botany
                black-stemmed spleenworts,conservation,new taxon,species complex,taxonomy
                Plant science & Botany
                black-stemmed spleenworts, conservation, new taxon, species complex, taxonomy

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