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      The origin and early evolution of vascular plant shoots and leaves

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          Abstract

          The morphology of plant fossils from the Rhynie chert has generated longstanding questions about vascular plant shoot and leaf evolution, for instance, which morphologies were ancestral within land plants, when did vascular plants first arise and did leaves have multiple evolutionary origins? Recent advances combining insights from molecular phylogeny, palaeobotany and evo–devo research address these questions and suggest the sequence of morphological innovation during vascular plant shoot and leaf evolution. The evidence pinpoints testable developmental and genetic hypotheses relating to the origin of branching and indeterminate shoot architectures prior to the evolution of leaves, and demonstrates underestimation of polyphyly in the evolution of leaves from branching forms in ‘telome theory’ hypotheses of leaf evolution. This review discusses fossil, developmental and genetic evidence relating to the evolution of vascular plant shoots and leaves in a phylogenetic framework.

          This article is part of a discussion meeting issue ‘The Rhynie cherts: our earliest terrestrial ecosystem revisited’.

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          Identification of a functional transposon insertion in the maize domestication gene tb1.

          Genetic diversity created by transposable elements is an important source of functional variation upon which selection acts during evolution. Transposable elements are associated with adaptation to temperate climates in Drosophila, a SINE element is associated with the domestication of small dog breeds from the gray wolf and there is evidence that transposable elements were targets of selection during human evolution. Although the list of examples of transposable elements associated with host gene function continues to grow, proof that transposable elements are causative and not just correlated with functional variation is limited. Here we show that a transposable element (Hopscotch) inserted in a regulatory region of the maize domestication gene, teosinte branched1 (tb1), acts as an enhancer of gene expression and partially explains the increased apical dominance in maize compared to its progenitor, teosinte. Molecular dating indicates that the Hopscotch insertion predates maize domestication by at least 10,000 years, indicating that selection acted on standing variation rather than new mutation.
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            Contribution of cryptogamic covers to the global cycles of carbon and nitrogen

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              A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis.

              The KNOTTED class of plant genes encodes homeodomain proteins. These genes have been found in all plant species where they have been sought and, where examined, show expression patterns that suggest they play an important role in shoot meristem function. Until now, all mutant phenotypes associated with these genes have been due to gain-of-function mutations, making it difficult to deduce their wild-type function. Here we present evidence that the Arabidopsis SHOOT-MERISTEMLESS (STM) gene, required for shoot apical meristem formation during embryogenesis, encodes a class I KNOTTED-like protein. We also describe the expression pattern of this gene in the wild-type plant. To our knowledge, STM is the first gene shown to mark a specific pattern element in the developing plant embryo both phenotypically and molecularly.
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                Author and article information

                Journal
                Philos Trans R Soc Lond B Biol Sci
                Philos. Trans. R. Soc. Lond., B, Biol. Sci
                RSTB
                royptb
                Philosophical Transactions of the Royal Society B: Biological Sciences
                The Royal Society
                0962-8436
                1471-2970
                5 February 2018
                18 December 2017
                18 December 2017
                : 373
                : 1739 , Discussion meeting issue ‘The Rhynie cherts: our earliest terrestrial ecosystem revisited’ compiled and edited by Dianne Edwards, Liam Dolan and Paul Kenrick
                : 20160496
                Affiliations
                [1 ]School of Biological Sciences, University of Bristol , 24 Tyndall Avenue, Bristol BS8 1TQ, UK
                [2 ]School of Earth Sciences, University of Bristol , 24 Tyndall Avenue, Bristol BS8 1TQ, UK
                Author notes

                One contribution of 18 to a discussion meeting issue ‘ The Rhynie cherts: our earliest terrestrial ecosystem revisited’.

                Author information
                http://orcid.org/0000-0002-5228-600X
                http://orcid.org/0000-0002-7453-3841
                Article
                rstb20160496
                10.1098/rstb.2016.0496
                5745332
                29254961
                782c5d73-a4f3-4dff-8ef6-78fded37e071
                © 2017 The Authors.

                Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.

                History
                : 11 August 2017
                Funding
                Funded by: Royal Society, http://dx.doi.org/10.13039/501100000288;
                Award ID: uf130563
                Funded by: Natural Environment Research Council, http://dx.doi.org/10.13039/501100000270;
                Award ID: NE/N003438/1
                Categories
                1001
                70
                58
                204
                Articles
                Review Article
                Custom metadata
                February 5, 2018

                Philosophy of science
                land plant,shoot,leaf evolution,evo–devo,plant body plan
                Philosophy of science
                land plant, shoot, leaf evolution, evo–devo, plant body plan

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