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      Haematological and biochemical reference intervals for wild green turtles ( Chelonia mydas): a Bayesian approach for small sample sizes

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          Abstract

          Animal health is directly linked to population viability, which may be impacted by anthropogenic disturbances and diseases. Reference intervals (RIs) for haematology and blood biochemistry are essential tools for the assessment of animal health. However, establishing and interpreting robust RIs for threatened species is often challenged by small sample sizes. Bayesian predictive modelling is well suited to sample size limitations, accounting for individual variation and interactions between influencing variables. We aimed to derive baseline RIs for green turtles ( Chelonia mydas) across two foraging aggregations in North Queensland, Australia, using Bayesian generalized linear mixed-effects models ( n = 97). The predicted RIs were contained within previously published values and had narrower credible intervals. Most analytes did not vary significantly with foraging ground (76%, 22/29), body mass (86%, 25/29) or curved carapace length (83%, 24/29). Length and body mass effects were found for eosinophils, heterophil:lymphocyte ratio, alkaline phosphatase, aspartate transaminase and urea. Significant differences between foraging grounds were found for albumin, cholesterol, potassium, total protein, triglycerides, uric acid and calcium:phosphorus ratio. We provide derived RIs for foraging green turtles, which will be helpful in future population health assessments and conservation efforts. Future RI studies on threatened species would benefit from adapting established veterinary and biomedical standards.

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          The FAIR Guiding Principles for scientific data management and stewardship

          There is an urgent need to improve the infrastructure supporting the reuse of scholarly data. A diverse set of stakeholders—representing academia, industry, funding agencies, and scholarly publishers—have come together to design and jointly endorse a concise and measureable set of principles that we refer to as the FAIR Data Principles. The intent is that these may act as a guideline for those wishing to enhance the reusability of their data holdings. Distinct from peer initiatives that focus on the human scholar, the FAIR Principles put specific emphasis on enhancing the ability of machines to automatically find and use the data, in addition to supporting its reuse by individuals. This Comment is the first formal publication of the FAIR Principles, and includes the rationale behind them, and some exemplar implementations in the community.
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            brms: An R Package for Bayesian Multilevel Models Using Stan

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              Reporting animal research: Explanation and elaboration for the ARRIVE guidelines 2.0

              Improving the reproducibility of biomedical research is a major challenge. Transparent and accurate reporting is vital to this process; it allows readers to assess the reliability of the findings and repeat or build upon the work of other researchers. The ARRIVE guidelines (Animal Research: Reporting In Vivo Experiments) were developed in 2010 to help authors and journals identify the minimum information necessary to report in publications describing in vivo experiments. Despite widespread endorsement by the scientific community, the impact of ARRIVE on the transparency of reporting in animal research publications has been limited. We have revised the ARRIVE guidelines to update them and facilitate their use in practice. The revised guidelines are published alongside this paper. This explanation and elaboration document was developed as part of the revision. It provides further information about each of the 21 items in ARRIVE 2.0, including the rationale and supporting evidence for their inclusion in the guidelines, elaboration of details to report, and examples of good reporting from the published literature. This document also covers advice and best practice in the design and conduct of animal studies to support researchers in improving standards from the start of the experimental design process through to publication.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                Conserv Physiol
                Conserv Physiol
                conphys
                Conservation Physiology
                Oxford University Press
                2051-1434
                2022
                07 July 2022
                07 July 2022
                : 10
                : 1
                : coac043
                Affiliations
                College of Public Health, Medical and Veterinary Sciences, James Cook University , Townsville, Queensland, 4811, Australia
                College of Public Health, Medical and Veterinary Sciences, James Cook University , Townsville, Queensland, 4811, Australia
                School of Chemistry and Molecular Biosciences, The University of Queensland , Brisbane, Queensland, 4072, Australia
                College of Public Health, Medical and Veterinary Sciences, James Cook University , Townsville, Queensland, 4811, Australia
                College of Public Health, Medical and Veterinary Sciences, James Cook University , Townsville, Queensland, 4811, Australia
                Australian Institute of Tropical Health and Medicine, James Cook University , Townsville, Queensland, 4811, Australia
                College of Public Health, Medical and Veterinary Sciences, James Cook University , Townsville, Queensland, 4811, Australia
                College of Public Health, Medical and Veterinary Sciences, James Cook University , Townsville, Queensland, 4811, Australia
                North Coast Veterinary Specialist and Referral Centre , Sunshine Coast, Queensland, 4556, Australia
                College of Public Health, Medical and Veterinary Sciences, James Cook University , Townsville, Queensland, 4811, Australia
                Author notes
                Corresponding author: College of Public Health, Medical and Veterinary Sciences, James Cook University, Townsville, Queensland, 4811, Australia. E-mail: sara.kophamel@ 123456my.jcu.edu.au

                These authors contributed equally to this work.

                Article
                coac043
                10.1093/conphys/coac043
                10020984
                36937701
                67ba6935-ad1f-48ff-9574-05cc0e8e9d68
                © The Author(s) 2022. Published by Oxford University Press and the Society for Experimental Biology.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 1 March 2022
                : 20 April 2022
                : 7 June 2022
                : 9 June 2022
                Page count
                Pages: 18
                Categories
                AcademicSubjects/SCI00840
                Research Article

                wildlife health,sea turtles,population assessment,blood analysis,baseline values,australia

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