0
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Field‐based adipose tissue quantification in sea turtles using bioelectrical impedance spectroscopy validated with CT scans and deep learning

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Loss of adipose tissue in vertebrate wildlife species is indicative of decreased nutritional and health status and is linked to environmental stress and diseases. Body condition indices (BCI) are commonly used in ecological studies to estimate adipose tissue mass across wildlife populations. However, these indices have poor predictive power, which poses the need for quantitative methods for improved population assessments. Here, we calibrate bioelectrical impedance spectroscopy (BIS) as an alternative approach for assessing the nutritional status of vertebrate wildlife in ecological studies. BIS is a portable technology that can estimate body composition from measurements of body impedance and is widely used in humans. BIS is a predictive technique that requires calibration using a reference body composition method. Using sea turtles as model organisms, we propose a calibration protocol using computed tomography (CT) scans, with the prediction equation being: adipose tissue mass (kg) = body mass − (−0.03 [intercept] − 0.29 * length 2/resistance at 50 kHz + 1.07 * body mass − 0.11 * time after capture). CT imaging allows for the quantification of body fat. However, processing the images manually is prohibitive due to the extensive time requirement. Using a form of artificial intelligence (AI), we trained a computer model to identify and quantify nonadipose tissue from the CT images, and adipose tissue was determined by the difference in body mass. This process enabled estimating adipose tissue mass from bioelectrical impedance measurements. The predictive performance of the model was built on 2/3 samples and tested against 1/3 samples. Prediction of adipose tissue percentage had greater accuracy when including impedance parameters (mean bias = 0.11%–0.61%) as predictor variables, compared with using body mass alone (mean bias = 6.35%). Our standardized BIS protocol improves on conventional body composition assessment methods (e.g., BCI) by quantifying adipose tissue mass. The protocol can be applied to other species for the validation of BIS and to provide robust information on the nutritional and health status of wildlife, which, in turn, can be used to inform conservation decisions at the management level.

          Abstract

          Loss of body fat (i.e., adipose tissue) in vertebrate wildlife species is indicative of decreased nutritional and health status and is linked to environmental stress and diseases. Here, we calibrate bioelectrical impedance spectroscopy (BIS) for assessing the nutritional status of sea turtles. Using a form of artificial intelligence, we trained a computer model to identify and quantify body fat from computed tomography scans, which enabled estimating body fat from the BIS measurements. Our standardized BIS protocol can be applied to other species and taxa and improves on conventional body composition assessment methods (e.g., body condition indices) by accurately estimating body fat.

          Related collections

          Most cited references69

          • Record: found
          • Abstract: found
          • Article: not found

          PyTorch: An Imperative Style, High-Performance Deep Learning Library

          Deep learning frameworks have often focused on either usability or speed, but not both. PyTorch is a machine learning library that shows that these two goals are in fact compatible: it provides an imperative and Pythonic programming style that supports code as a model, makes debugging easy and is consistent with other popular scientific computing libraries, while remaining efficient and supporting hardware accelerators such as GPUs. In this paper, we detail the principles that drove the implementation of PyTorch and how they are reflected in its architecture. We emphasize that every aspect of PyTorch is a regular Python program under the full control of its user. We also explain how the careful and pragmatic implementation of the key components of its runtime enables them to work together to achieve compelling performance. We demonstrate the efficiency of individual subsystems, as well as the overall speed of PyTorch on several common benchmarks. 12 pages, 3 figures, NeurIPS 2019
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Understanding Bland Altman analysis

            In a contemporary clinical laboratory it is very common to have to assess the agreement between two quantitative methods of measurement. The correct statistical approach to assess this degree of agreement is not obvious. Correlation and regression studies are frequently proposed. However, correlation studies the relationship between one variable and another, not the differences, and it is not recommended as a method for assessing the comparability between methods.
In 1983 Altman and Bland (B&A) proposed an alternative analysis, based on the quantification of the agreement between two quantitative measurements by studying the mean difference and constructing limits of agreement.
The B&A plot analysis is a simple way to evaluate a bias between the mean differences, and to estimate an agreement interval, within which 95% of the differences of the second method, compared to the first one, fall. Data can be analyzed both as unit differences plot and as percentage differences plot.
The B&A plot method only defines the intervals of agreements, it does not say whether those limits are acceptable or not. Acceptable limits must be defined a priori, based on clinical necessity, biological considerations or other goals.
The aim of this article is to provide guidance on the use and interpretation of Bland Altman analysis in method comparison studies.
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              Least-Squares Means: TheRPackagelsmeans

                Bookmark

                Author and article information

                Contributors
                sara.kophamel@my.jcu.edu.au
                Journal
                Ecol Evol
                Ecol Evol
                10.1002/(ISSN)2045-7758
                ECE3
                Ecology and Evolution
                John Wiley and Sons Inc. (Hoboken )
                2045-7758
                13 December 2022
                December 2022
                : 12
                : 12 ( doiID: 10.1002/ece3.v12.12 )
                : e9610
                Affiliations
                [ 1 ] College of Public Health, Medical and Veterinary Sciences James Cook University Townsville Queensland Australia
                [ 2 ] School of Chemistry and Molecular Biosciences The University of Queensland St Lucia Queensland Australia
                [ 3 ] College of Science and Engineering James Cook University Townsville Queensland Australia
                [ 4 ] Australian Institute of Tropical Health and Medicine Townsville Queensland Australia
                [ 5 ] North Queensland X‐Ray Services Townsville Queensland Australia
                [ 6 ] Department of Environment and Science Queensland Government Townsville Queensland Australia
                [ 7 ] Department of Animal Medicine and Surgery CEU Cardenal Herrera University, CEU Universities Valencia Spain
                Author notes
                [*] [* ] Correspondence

                Sara Kophamel, College of Public Health, Medical and Veterinary Sciences, James Cook University, 1 James Cook Dr, Townsville QLD 4814, Australia.

                Email: sara.kophamel@ 123456my.jcu.edu.au

                Author information
                https://orcid.org/0000-0001-5200-0107
                Article
                ECE39610 ECE-2022-10-01593
                10.1002/ece3.9610
                9748411
                36523527
                9a830c73-62bd-47fa-b6b3-861b5404b4ae
                © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 27 October 2022
                : 23 November 2022
                Page count
                Figures: 5, Tables: 1, Pages: 13, Words: 9647
                Funding
                Funded by: James Cook University (International Postgraduate Research Scholarship) , doi 10.13039/501100001792;
                Funded by: North Queensland X‐Ray Services
                Funded by: Queensland Parks and Wildlife Service (Department of Environment and Science, Queensland Government) , doi 10.13039/501100015193;
                Funded by: Sea World Research and Rescue Foundation , doi 10.13039/100009034;
                Award ID: SWR/6/2019
                Categories
                Ecoinformatics
                Ecophysiology
                Research Article
                Research Articles
                Custom metadata
                2.0
                December 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.2.2 mode:remove_FC converted:14.12.2022

                Evolutionary Biology
                adipose tissue,bland–altman,body condition,body fat,nutritional status,sea turtle

                Comments

                Comment on this article