6
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Modelling white matter with spherical deconvolution: How and why?

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Since the realization that diffusion MRI can probe the microstructural organization and orientation of biological tissue in vivo and non‐invasively, a multitude of diffusion imaging methods have been developed and applied to study the living human brain. Diffusion tensor imaging was the first model to be widely adopted in clinical and neuroscience research, but it was also clear from the beginning that it suffered from limitations when mapping complex configurations, such as crossing fibres. In this review, we highlight the main steps that have led the field of diffusion imaging to move from the tensor model to the adoption of diffusion and fibre orientation density functions as a more effective way to describe the complexity of white matter organization within each brain voxel. Among several techniques, spherical deconvolution has emerged today as one of the main approaches to model multiple fibre orientations and for tractography applications. Here we illustrate the main concepts and the reasoning behind this technique, as well as the latest developments in the field. The final part of this review provides practical guidelines and recommendations on how to set up processing and acquisition protocols suitable for spherical deconvolution.

          Related collections

          Most cited references87

          • Record: found
          • Abstract: found
          • Article: not found

          Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution.

          Diffusion-weighted (DW) MR images contain information about the orientation of brain white matter fibres that potentially can be used to study human brain connectivity in vivo using tractography techniques. Currently, the diffusion tensor model is widely used to extract fibre directions from DW-MRI data, but fails in regions containing multiple fibre orientations. The spherical deconvolution technique has recently been proposed to address this limitation. It provides an estimate of the fibre orientation distribution (FOD) by assuming the DW signal measured from any fibre bundle is adequately described by a single response function. However, the deconvolution is ill-conditioned and susceptible to noise contamination. This tends to introduce artefactual negative regions in the FOD, which are clearly physically impossible. In this study, the introduction of a constraint on such negative regions is proposed to improve the conditioning of the spherical deconvolution. This approach is shown to provide FOD estimates that are robust to noise whilst preserving angular resolution. The approach also permits the use of super-resolution, whereby more FOD parameters are estimated than were actually measured, improving the angular resolution of the results. The method provides much better defined fibre orientation estimates, and allows orientations to be resolved that are separated by smaller angles than previously possible. This should allow tractography algorithms to be designed that are able to track reliably through crossing fibre regions.
            Bookmark
            • Record: found
            • Abstract: not found
            • Article: not found

            MRtrix: Diffusion tractography in crossing fiber regions

              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              About "axial" and "radial" diffusivities.

              This article presents the potential problems arising from the use of "axial" and "radial" diffusivities, derived from the eigenvalues of the diffusion tensor, and their interpretation in terms of the underlying biophysical properties, such as myelin and axonal density. Simulated and in vivo data are shown. The simulations demonstrate that a change in "radial" diffusivity can cause a fictitious change in "axial" diffusivity and vice versa in voxels characterized by crossing fibers. The in vivo data compare the direction of the principle eigenvector in four different subjects, two healthy and two affected by multiple sclerosis, and show that the angle, alpha, between the principal eigenvectors of corresponding voxels of registered datasets is greater than 45 degrees in areas of low anisotropy, severe pathology, and partial volume. Also, there are areas of white matter pathology where the "radial" diffusivity is 10% greater than that of the corresponding normal tissue and where the direction of the principal eigenvector is altered by more than 45 degrees compared to the healthy case. This should strongly discourage researchers from interpreting changes of the "axial" and "radial" diffusivities on the basis of the underlying tissue structure, unless accompanied by a thorough investigation of their mathematical and geometrical properties in each dataset studied. (c) 2009 Wiley-Liss, Inc.
                Bookmark

                Author and article information

                Contributors
                flavio.dellacqua@kcl.ac.uk
                Journal
                NMR Biomed
                NMR Biomed
                10.1002/(ISSN)1099-1492
                NBM
                Nmr in Biomedicine
                John Wiley and Sons Inc. (Hoboken )
                0952-3480
                1099-1492
                16 August 2018
                April 2019
                : 32
                : 4 , Diffusion MRI of the brain: The naked truth ( doiID: 10.1002/nbm.v32.4 )
                : e3945
                Affiliations
                [ 1 ] Institute of Psychiatry Psychology and Neuroscience, King's College London Department of Neuroimaging UK
                [ 2 ] Sackler Institute for Translational Neurodevelopment, Institute of Psychiatry Psychology and Neuroscience, King's College London Department of Forensic and Neurodevelopmental Sciences UK
                [ 3 ] King's College London Division of Imaging Sciences and Biomedical Engineering UK
                Author notes
                [*] [* ] Correspondence

                Flavio Dell'Acqua, Institute of Psychiatry Psychology and Neuroscience, King's College London, UK.

                Email: flavio.dellacqua@ 123456kcl.ac.uk

                Author information
                http://orcid.org/0000-0001-5313-5476
                http://orcid.org/0000-0001-5591-7383
                Article
                NBM3945 NBM-17-0226.R1
                10.1002/nbm.3945
                6585735
                30113753
                42cd0b49-6454-4890-9b4a-e6e3d0d465fe
                © 2018 The Authors. NMR in Biomedicine published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 16 September 2017
                : 18 April 2018
                : 24 April 2018
                Page count
                Figures: 9, Tables: 0, Pages: 18, Words: 10419
                Categories
                Special Issue Review Article
                Special Issue Review Articles
                Custom metadata
                2.0
                nbm3945
                April 2019
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.6.4 mode:remove_FC converted:20.06.2019

                Radiology & Imaging
                diffusion imaging,diffusion tensor imaging,fiber orientation density function,fiber response,odf,mri,spherical deconvolution,tractography

                Comments

                Comment on this article