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      The first evidence of Asian-like CPV-2b in Slovakia in a vaccinated dog with an acute fatal course of parvovirus infection: a case report

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          Abstract

          This study provides a comprehensive description of the clinical course of a fatal parvovirus infection in a vaccinated dachshund puppy, along with the first identification of a new CPV-2 variant in Slovakia, elucidated through molecular amino acid analysis of the VP2 gene. The dog exhibited clinical signs such as apathy, vomiting, and bloody diarrhea. After confirming CPV-2 infection with a commercial snap test, intensive therapy was initiated. The dog succumbed within 48 h of admission. A rectal swab sample was collected, CPV-2 was examined using the PCR method, and sequenced. The virus detected in the patient was related to strains of CPV-2c of Asian origin and unrelated to European CPV-2b strains. The sequence had genetic signatures typical of Asian strains (VP2: 5Gly, 267Tyr, 324Ile, 370Arg, and 440Thr). Phylogenetic analysis classified this strain as similar to Asian strains of CPV-2c. It is believed to be derived from an Asian strain similar to CPV-2c that acquired the 426Asp mutation. With this finding, we present the first evidence of an Asian-like CPV-2b strain in the territory of Slovakia.

          Supplementary Information

          The online version contains supplementary material available at 10.1007/s11259-024-10492-z.

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          Most cited references51

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          The Phyre2 web portal for protein modeling, prediction and analysis.

          Phyre2 is a suite of tools available on the web to predict and analyze protein structure, function and mutations. The focus of Phyre2 is to provide biologists with a simple and intuitive interface to state-of-the-art protein bioinformatics tools. Phyre2 replaces Phyre, the original version of the server for which we previously published a paper in Nature Protocols. In this updated protocol, we describe Phyre2, which uses advanced remote homology detection methods to build 3D models, predict ligand binding sites and analyze the effect of amino acid variants (e.g., nonsynonymous SNPs (nsSNPs)) for a user's protein sequence. Users are guided through results by a simple interface at a level of detail they determine. This protocol will guide users from submitting a protein sequence to interpreting the secondary and tertiary structure of their models, their domain composition and model quality. A range of additional available tools is described to find a protein structure in a genome, to submit large number of sequences at once and to automatically run weekly searches for proteins that are difficult to model. The server is available at http://www.sbg.bio.ic.ac.uk/phyre2. A typical structure prediction will be returned between 30 min and 2 h after submission.
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            Evidence for antibody as a protective correlate for COVID-19 vaccines

            A correlate of protection (CoP) is urgently needed to expedite development of additional COVID-19 vaccines to meet unprecedented global demand. To assess whether antibody titers may reasonably predict efficacy and serve as the basis of a CoP, we evaluated the relationship between efficacy and in vitro neutralizing and binding antibodies of 7 vaccines for which sufficient data have been generated. Once calibrated to titers of human convalescent sera reported in each study, a robust correlation was seen between neutralizing titer and efficacy (ρ = 0.79) and binding antibody titer and efficacy (ρ = 0.93), despite geographically diverse study populations subject to different forces of infection and circulating variants, and use of different endpoints, assays, convalescent sera panels and manufacturing platforms. Together with evidence from natural history studies and animal models, these results support the use of post-immunization antibody titers as the basis for establishing a correlate of protection for COVID-19 vaccines.
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              The three-dimensional structure of canine parvovirus and its functional implications.

              The three-dimensional atomic structure of a single-stranded DNA virus has been determined. Infectious virions of canine parvovirus contain 60 protein subunits that are predominantly VP-2. The central structural motif of VP-2 has the same topology (an eight-stranded antiparallel beta barrel) as has been found in many other icosahedral viruses but represents only about one-third of the capsid protein. There is a 22 angstrom (A) long protrusion on the threefold axes, a 15 A deep canyon circulating about each of the five cylindrical structures at the fivefold axes, and a 15 A deep depression at the twofold axes. By analogy with rhinoviruses, the canyon may be the site of receptor attachment. Residues related to the antigenic properties of the virus are found on the threefold protrusions. Some of the amino termini of VP-2 run to the exterior in full but not empty virions, which is consistent with the observation that some VP-2 polypeptides in full particles can be cleaved by trypsin. Eleven nucleotides are seen in each of 60 symmetry-related pockets on the interior surface of the capsid and together account for 13 percent of the genome.
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                Author and article information

                Contributors
                patricia.petrouskova@uvlf.sk
                rene.mandelik@uvlf.sk
                Journal
                Vet Res Commun
                Vet Res Commun
                Veterinary Research Communications
                Springer Netherlands (Dordrecht )
                0165-7380
                1573-7446
                9 August 2024
                9 August 2024
                2024
                : 48
                : 5
                : 3253-3262
                Affiliations
                [1 ]GRID grid.412971.8, ISNI 0000 0001 2234 6772, Department of Epizootiology, Parasitology and Protection of One Health, , University of Veterinary Medicine and Pharmacy in Košice, ; Komenského 73, Košice, 041 81 Slovakia
                [2 ]GRID grid.412971.8, ISNI 0000 0001 2234 6772, Clinic of Ruminants, , University of Veterinary Medicine and Pharmacy in Košice, ; Komenského 73, Košice, 041 81 Slovakia
                Author information
                http://orcid.org/0009-0005-6371-9359
                http://orcid.org/0000-0003-3464-8502
                http://orcid.org/0000-0002-8559-3559
                http://orcid.org/0000-0002-4434-1443
                http://orcid.org/0000-0001-7480-1167
                http://orcid.org/0000-0002-3008-0908
                http://orcid.org/0000-0002-0508-398X
                http://orcid.org/0000-0002-3663-8765
                http://orcid.org/0009-0000-6534-0637
                http://orcid.org/0009-0002-5614-5877
                http://orcid.org/0000-0002-9424-8765
                http://orcid.org/0000-0001-9562-3224
                Article
                10492
                10.1007/s11259-024-10492-z
                11442606
                39120673
                2c2f90ad-8f9a-4bc9-9e46-f8b16f90bd55
                © The Author(s) 2024

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 28 May 2024
                : 2 August 2024
                Funding
                Funded by: University of Veterinary Medicine and Pharmacy
                Categories
                Case Report
                Custom metadata
                © Springer Nature B.V. 2024

                Veterinary medicine
                cpv-2,infection,dogs,phylogenetic analysis,slovakia
                Veterinary medicine
                cpv-2, infection, dogs, phylogenetic analysis, slovakia

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