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      Linkages of Various Calcium Sources on Immune Performance, Diarrhea Rate, Intestinal Barrier, and Post-gut Microbial Structure and Function in Piglets

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          Abstract

          The purpose of this experiment was to investigate the effects of different sources of calcium on immune performance, diarrhea rate, intestinal barrier, and post-intestinal flora structure and function in weaned piglets. A total of 1,000 weaned piglets were randomly assigned to five groups 10 replicate pens per treatment, 20 piglets per pen and fed calcium carbonate, calcium citrate, multiple calcium, and organic trace minerals of different concentrations of acidifier diets. The results of the study showed that the replacement of calcium carbonate with calcium citrate and multiple calcium had almost no significant effect on immune indexes (IL-1β, IL-6, IL-10, TNF-α) of piglets compared with the control group ( p > 0.05). The five groups did not show a change in the diarrhea rate and diarrhea index ( p > 0.05). The diet containing multiple calcium dramatically decreased the TP compared to the C and L diet ( p < 0.05). No significant difference in HDL was noted in the five groups ( p > 0.05). However, the concentration of LDL in blood in the multiple calcium group was significantly higher than that in groups L and D ( p < 0.05). Moreover, the concentration of Glu in blood in the multiple calcium group was significantly higher than that in group C ( p < 0.05). Compared with the control group, calcium citrate plus organic trace minerals diet markedly increased UCG-005 abundance in the colon ( p < 0.05). In addition, the relative abundance of Prevotellaceae_NK3B31_group had an upward trend in the colon of the M group compared to the D group ( p = 0.070). Meanwhile, calcium citrate plus organic trace minerals diet markedly increased Clostridium_sensu_stricto_1 abundance in the colon ( p < 0.05). Metagenomic predictions by PICRUSt suggested that the colonic and fecal microbiota was mainly involved in carbohydrate metabolism, amino acid metabolism, energy metabolism, and metabolism of cofactors and vitamins.

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          The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

          SILVA (from Latin silva, forest, http://www.arb-silva.de) is a comprehensive web resource for up to date, quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains and supplementary online services. The referred database release 111 (July 2012) contains 3 194 778 small subunit and 288 717 large subunit rRNA gene sequences. Since the initial description of the project, substantial new features have been introduced, including advanced quality control procedures, an improved rRNA gene aligner, online tools for probe and primer evaluation and optimized browsing, searching and downloading on the website. Furthermore, the extensively curated SILVA taxonomy and the new non-redundant SILVA datasets provide an ideal reference for high-throughput classification of data from next-generation sequencing approaches.
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            UPARSE: highly accurate OTU sequences from microbial amplicon reads.

            Amplified marker-gene sequences can be used to understand microbial community structure, but they suffer from a high level of sequencing and amplification artifacts. The UPARSE pipeline reports operational taxonomic unit (OTU) sequences with ≤1% incorrect bases in artificial microbial community tests, compared with >3% incorrect bases commonly reported by other methods. The improved accuracy results in far fewer OTUs, consistently closer to the expected number of species in a community.
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              Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

              mothur aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package for analyzing sequencing data. As a case study, we used mothur to trim, screen, and align sequences; calculate distances; assign sequences to operational taxonomic units; and describe the alpha and beta diversity of eight marine samples previously characterized by pyrosequencing of 16S rRNA gene fragments. This analysis of more than 222,000 sequences was completed in less than 2 h with a laptop computer.
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                Author and article information

                Contributors
                Journal
                Front Nutr
                Front Nutr
                Front. Nutr.
                Frontiers in Nutrition
                Frontiers Media S.A.
                2296-861X
                17 June 2022
                2022
                : 9
                : 921773
                Affiliations
                [1] 1State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Animal Science and Technology, Guangxi University , Nanning, China
                [2] 2Animal Nutritional Genome and Germplasm Innovation Research Center, College of Animal Science and Technology, Hunan Agricultural University , Changsha, China
                [3] 3Nanning Zeweier Feed Co., Ltd. , Nanning, China
                Author notes

                Edited by: Tao Hou, Huazhong Agricultural University, China

                Reviewed by: Danjun Guo, Wuhan Polytechnic University, China; Xiao Xu, Wuhan Polytechnic University, China

                *Correspondence: Hongbin Si, shb2009@ 123456gxu.edu.cn

                This article was submitted to Food Chemistry, a section of the journal Frontiers in Nutrition

                Article
                10.3389/fnut.2022.921773
                9248811
                2ade8cc5-248a-40f1-9f4b-d0c10e7aa69f
                Copyright © 2022 Wang, Yang, Peng, Lv, Wang, Cui, Wang, Zhou and Si.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 16 April 2022
                : 20 May 2022
                Page count
                Figures: 8, Tables: 5, Equations: 0, References: 75, Pages: 15, Words: 9584
                Funding
                Funded by: National Natural Science Foundation of China, doi 10.13039/501100001809;
                Funded by: Science and Technology Major Project of Guangxi, doi 10.13039/501100013091;
                Funded by: Guangxi Key Research and Development Program, doi 10.13039/501100017691;
                Categories
                Nutrition
                Original Research

                piglet,calcium,bacterial community,feces,metabolites
                piglet, calcium, bacterial community, feces, metabolites

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