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      Human cytomegalovirus UL138 interaction with USP1 activates STAT1 in infection

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          Abstract

          Innate immune responses are crucial for limiting virus infection. However, viruses often hijack our best defenses for viral objectives. Human Cytomegalovirus (HCMV) is a beta herpesvirus which establishes a life-long latent infection. Defining the virus-host interactions controlling latency and reactivation is vital to the control of viral disease risk posed by virus reactivation. We defined an interaction between UL138, a pro-latency HCMV gene, and the host deubiquitinating complex, UAF1-USP1. UAF1 is a scaffold protein pivotal for the activity of ubiquitin specific peptidases (USP), including USP1. UAF1-USP1 sustains an innate immune response through the phosphorylation and activation of signal transducer and activator of transcription-1 (pSTAT1), as well as regulates the DNA damage response. After the onset of viral DNA synthesis, pSTAT1 levels are elevated in infection and this depends upon UL138 and USP1. pSTAT1 localizes to viral centers of replication, binds to the viral genome, and influences UL138 expression. Inhibition of USP1 results in a failure to establish latency, marked by increased viral genome replication and production of viral progeny. Inhibition of Jak-STAT signaling also results in increased viral genome synthesis in hematopoietic cells, consistent with a role for USP1-mediated regulation of STAT1 signaling in the establishment of latency. These findings demonstrate the importance of the UL138-UAF1-USP1 virus-host interaction in regulating HCMV latency establishment through the control of innate immune signaling. It will be important going forward to distinguish roles of UAF1-USP1 in regulating pSTAT1 relative to its role in the DNA damage response in HCMV infection.

          Author summary

          Human cytomegalovirus (HCMV) is one of nine herpesviruses that infect humans. Following a primary infection, HCMV establishes a life-long latent infection that is marked by sporadic, and likely frequent reactivation events. While these reactivation events are asymptomatic in the immune competent host, they pose important disease risks for the immune compromised, including solid organ or stem cell transplant recipients. Defining complex virus-host interactions underlying mechanisms important for viral latency and reactivation is critical to developing novel strategies to prevent CMV disease following reactivation. We show that a viral latency protein, UL138, interacts with the deubiquitinating complex, UAF1-USP1 to enhance and sustain phosphorylation and activation of signal transducer and activator of transcription 1 (STAT1). STAT1 is a major regulator of the antiviral innate immune response and HCMV is well characterized in its ability to evade this response. However, we demonstrate that HCMV commandeers STAT1 through this interaction to restrict viral replication for latency, in part by acting as a viral transcription factor to regulate UL138 expression. The regulation of STAT1 provides a novel mechanism by which HCMV recruits antiviral innate host responses for viral latency.

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          Most cited references108

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          Chronic inflammation in the etiology of disease across the life span

          Although intermittent increases in inflammation are critical for survival during physical injury and infection, recent research has revealed that certain social, environmental and lifestyle factors can promote systemic chronic inflammation (SCI) that can, in turn, lead to several diseases that collectively represent the leading causes of disability and mortality worldwide, such as cardiovascular disease, cancer, diabetes mellitus, chronic kidney disease, non-alcoholic fatty liver disease and autoimmune and neurodegenerative disorders. In the present Perspective we describe the multi-level mechanisms underlying SCI and several risk factors that promote this health-damaging phenotype, including infections, physical inactivity, poor diet, environmental and industrial toxicants and psychological stress. Furthermore, we suggest potential strategies for advancing the early diagnosis, prevention and treatment of SCI.
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            Regulation of type I interferon responses.

            Type I interferons (IFNs) activate intracellular antimicrobial programmes and influence the development of innate and adaptive immune responses. Canonical type I IFN signalling activates the Janus kinase (JAK)-signal transducer and activator of transcription (STAT) pathway, leading to transcription of IFN-stimulated genes (ISGs). Host, pathogen and environmental factors regulate the responses of cells to this signalling pathway and thus calibrate host defences while limiting tissue damage and preventing autoimmunity. Here, we summarize the signalling and epigenetic mechanisms that regulate type I IFN-induced STAT activation and ISG transcription and translation. These regulatory mechanisms determine the biological outcomes of type I IFN responses and whether pathogens are cleared effectively or chronic infection or autoimmune disease ensues.
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              Interferons and viruses: an interplay between induction, signalling, antiviral responses and virus countermeasures.

              The interferon (IFN) system is an extremely powerful antiviral response that is capable of controlling most, if not all, virus infections in the absence of adaptive immunity. However, viruses can still replicate and cause disease in vivo, because they have some strategy for at least partially circumventing the IFN response. We reviewed this topic in 2000 [Goodbourn, S., Didcock, L. & Randall, R. E. (2000). J Gen Virol 81, 2341-2364] but, since then, a great deal has been discovered about the molecular mechanisms of the IFN response and how different viruses circumvent it. This information is of fundamental interest, but may also have practical application in the design and manufacture of attenuated virus vaccines and the development of novel antiviral drugs. In the first part of this review, we describe how viruses activate the IFN system, how IFNs induce transcription of their target genes and the mechanism of action of IFN-induced proteins with antiviral action. In the second part, we describe how viruses circumvent the IFN response. Here, we reflect upon possible consequences for both the virus and host of the different strategies that viruses have evolved and discuss whether certain viruses have exploited the IFN response to modulate their life cycle (e.g. to establish and maintain persistent/latent infections), whether perturbation of the IFN response by persistent infections can lead to chronic disease, and the importance of the IFN system as a species barrier to virus infections. Lastly, we briefly describe applied aspects that arise from an increase in our knowledge in this area, including vaccine design and manufacture, the development of novel antiviral drugs and the use of IFN-sensitive oncolytic viruses in the treatment of cancer.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: InvestigationRole: MethodologyRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: InvestigationRole: Methodology
                Role: Data curationRole: InvestigationRole: Methodology
                Role: Data curationRole: InvestigationRole: MethodologyRole: Writing – review & editing
                Role: Data curationRole: InvestigationRole: Methodology
                Role: Data curationRole: Methodology
                Role: Data curationRole: Formal analysisRole: Methodology
                Role: ConceptualizationRole: Project administration
                Role: ConceptualizationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Pathog
                PLoS Pathog
                plos
                PLOS Pathogens
                Public Library of Science (San Francisco, CA USA )
                1553-7366
                1553-7374
                8 June 2023
                June 2023
                : 19
                : 6
                : e1011185
                Affiliations
                [1 ] Department of Immunobiology, University of Arizona, Tucson, Arizona, United States of America
                [2 ] BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America
                [3 ] Vaccine and Gene Therapy Institute, Oregon Health and Science University, Beaverton, Oregon, United States of America
                [4 ] Imanis Life Sciences, Rochester, Minnesota, United States of America
                [5 ] Department of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, Wisconsin, United States of America
                [6 ] Abbvie, Chicago, Illinois, United States of America
                State University of New York Upstate Medical University, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0002-6646-7290
                Article
                PPATHOGENS-D-23-00231
                10.1371/journal.ppat.1011185
                10284425
                37289831
                14f8154f-3675-4799-8def-609fd4e3da3c
                © 2023 Zarrella et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 6 February 2023
                : 30 May 2023
                Page count
                Figures: 8, Tables: 3, Pages: 29
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100000060, National Institute of Allergy and Infectious Diseases;
                Award ID: AI079059
                Award Recipient :
                Funded by: National Institute of Allergy and Infectious Disease
                Award ID: AI169728
                Award Recipient :
                Funded by: National Institute of Allergy and Infectious Disease
                Award ID: AI127335
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000060, National Institute of Allergy and Infectious Diseases;
                Award ID: AI127335
                Award Recipient :
                Funded by: National Institute of Aging
                Award ID: AG058503
                Award Recipient :
                Funded by: National Institute of Allergy and Infectious Disease
                Award ID: AI079059-14S1
                Award Recipient :
                This work was funded by grants from the National Institute of Allergy and Infectious Diseases (NIAID) to FG (AI079059, AI169728, and AI127335) and JAN (AI127335). KZ was supported by T32 (AG058503) from the National Institute of Aging. PL is supported by AI079059-14S1. FG and JAN receive salary support on grants from NIAID, listed above. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Microbiology
                Virology
                Viral Persistence and Latency
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Connective Tissue Cells
                Fibroblasts
                Biology and Life Sciences
                Anatomy
                Biological Tissue
                Connective Tissue
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                Medicine and Health Sciences
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                Interferons
                Biology and life sciences
                Cell biology
                Signal transduction
                Cell signaling
                STAT signaling
                Biology and Life Sciences
                Genetics
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                Viral Genomics
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                Biology and Life Sciences
                Microbiology
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                Viral Genome
                Biology and Life Sciences
                Microbiology
                Virology
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                Biology and life sciences
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                Biology and Life Sciences
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                Human Cytomegalovirus
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Pathogens
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                Herpesviruses
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                Biology and Life Sciences
                Organisms
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                Biology and Life Sciences
                Genetics
                Gene Expression
                Custom metadata
                vor-update-to-uncorrected-proof
                2023-06-21
                All data is contained within the manuscript. Proteomic data (peptide sequences) is supplied in Supplementary Information.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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