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      Intrachromosomal karyotype asymmetry in Orchidaceae

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          Abstract

          The asymmetry indexes have helped cytotaxonomists to interpret and classify plant karyotypes for species delimitation efforts. However, there is no consensus about the best method to calculate the intrachromosomal asymmetry. The present study aimed to compare different intrachromosomal asymmetry indexes in order to indicate which are more efficient for the estimation of asymmetry in different groups of orchids. Besides, we aimed to compare our results with the Orchidaceae phylogenetic proposal to test the hypothesis of Stebbins (1971). Through a literature review, karyotypes were selected and analyzed comparatively with ideal karyotypes in a cluster analysis. All karyotypes showed some level of interchromosomal asymmetry, ranging from slightly asymmetric to moderately asymmetric. The five tested intrachromosomal asymmetry indexes indicated Sarcoglottis grandiflora as the species with the most symmetrical karyotype and Christensonella pachyphylla with the most asymmetrical karyotype. In the cluster analysis, the largest number of species were grouped with the intermediary ideal karyotypes B or C. Considering our results, we recommend the combined use of at least two indexes, especially Ask% or A1 with Syi, for cytotaxonomic analysis in groups of orchids. In an evolutionary perspective, our results support Stebbins’ hypothesis that asymmetric karyotypes derive from a symmetric karyotypes.

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          Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks.

          Dendroscope 3 is a new program for working with rooted phylogenetic trees and networks. It provides a number of methods for drawing and comparing rooted phylogenetic networks, and for computing them from rooted trees. The program can be used interactively or in command-line mode. The program is written in Java, use of the software is free, and installers for all 3 major operating systems can be downloaded from www.dendroscope.org. [Phylogenetic trees; phylogenetic networks; software.].
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            An updated classification of Orchidaceae

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              A New Method for Estimating Karyotype Asymmetry

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                Author and article information

                Journal
                Genet Mol Biol
                Genet. Mol. Biol
                gmb
                Genetics and Molecular Biology
                Sociedade Brasileira de Genética
                1415-4757
                1678-4685
                22 June 2017
                Jul-Sep 2017
                : 40
                : 3
                : 610-619
                Affiliations
                [1 ]Departamento de Ciências Biológicas, Laboratório de Citogenética Vegetal, Centro de Ciências Agrárias, Universidade Federal da Paraíba, Campus II, Areia, PB, Brazil
                [2 ]Departamento de Genética, Instituto de Biociências, Universidade Estadual Paulista “Júlio de Mesquita Filho”, Botucatu, SP, Brazil
                [3 ]Instituto de Ciências e Tecnologia, Universidade Federal de São Paulo, São José dos Campos, SP, Brazil
                Author notes
                Send correspondence to Felipe Nollet. Departamento de Ciências Biológicas, Laboratório de Citogenética Vegetal, Centro de Ciências Agrárias, Universidade Federal da Paraíba, Campus II, 58.397-000 Areia, PB, Brazil. E-mail: nolletmedeiros@ 123456yahoo.com.br
                Article
                S1415-47572017005017101
                10.1590/1678-4685-GMB-2016-0264
                5596371
                28644507
                6edefe49-1abf-42a8-9e7f-79b29da70dd9
                Copyright © 2017, Sociedade Brasileira de Genética.

                License information: This is an open-access article distributed under the terms of the Creative Commons Attribution License (type CC-BY), which permits unrestricted use, distribution and reproduction in any medium, provided the original article is properly cited.

                History
                : 03 October 2016
                : 19 December 2016
                Page count
                Figures: 3, Tables: 2, Equations: 6, References: 54, Pages: 10
                Categories
                Plant Genetics

                Molecular biology
                asymmetry index,karyotype symmetry,chromosome,cytogenetic,evolution
                Molecular biology
                asymmetry index, karyotype symmetry, chromosome, cytogenetic, evolution

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