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      Haem-activated promiscuous targeting of artemisinin in Plasmodium falciparum

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          Abstract

          The mechanism of action of artemisinin and its derivatives, the most potent of the anti-malarial drugs, is not completely understood. Here we present an unbiased chemical proteomics analysis to directly explore this mechanism in Plasmodium falciparum. We use an alkyne-tagged artemisinin analogue coupled with biotin to identify 124 artemisinin covalent binding protein targets, many of which are involved in the essential biological processes of the parasite. Such a broad targeting spectrum disrupts the biochemical landscape of the parasite and causes its death. Furthermore, using alkyne-tagged artemisinin coupled with a fluorescent dye to monitor protein binding, we show that haem, rather than free ferrous iron, is predominantly responsible for artemisinin activation. The haem derives primarily from the parasite's haem biosynthesis pathway at the early ring stage and from haemoglobin digestion at the latter stages. Our results support a unifying model to explain the action and specificity of artemisinin in parasite killing.

          Abstract

          The mechanism of action of artemisinin, an antimalarial drug, is not well understood. Here, the authors use a labelled artemisinin analogue to show that the drug is mainly activated by haem and then binds covalently to over 120 proteins in the malaria parasite, affecting many of its cellular processes.

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          Most cited references45

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          Gene Ontology: tool for the unification of biology

          Genomic sequencing has made it clear that a large fraction of the genes specifying the core biological functions are shared by all eukaryotes. Knowledge of the biological role of such shared proteins in one organism can often be transferred to other organisms. The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing. To this end, three independent ontologies accessible on the World-Wide Web (http://www.geneontology.org) are being constructed: biological process, molecular function and cellular component.
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            Integration of biological networks and gene expression data using Cytoscape.

            Cytoscape is a free software package for visualizing, modeling and analyzing molecular and genetic interaction networks. This protocol explains how to use Cytoscape to analyze the results of mRNA expression profiling, and other functional genomics and proteomics experiments, in the context of an interaction network obtained for genes of interest. Five major steps are described: (i) obtaining a gene or protein network, (ii) displaying the network using layout algorithms, (iii) integrating with gene expression and other functional attributes, (iv) identifying putative complexes and functional modules and (v) identifying enriched Gene Ontology annotations in the network. These steps provide a broad sample of the types of analyses performed by Cytoscape.
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              Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

              Malaria elimination strategies require surveillance of the parasite population for genetic changes that demand a public health response, such as new forms of drug resistance. 1,2 Here we describe methods for large-scale analysis of genetic variation in Plasmodium falciparum by deep sequencing of parasite DNA obtained from the blood of patients with malaria, either directly or after short term culture. Analysis of 86,158 exonic SNPs that passed genotyping quality control in 227 samples from Africa, Asia and Oceania provides genome-wide estimates of allele frequency distribution, population structure and linkage disequilibrium. By comparing the genetic diversity of individual infections with that of the local parasite population, we derive a metric of within-host diversity that is related to the level of inbreeding in the population. An open-access web application has been established for exploration of regional differences in allele frequency and of highly differentiated loci in the P. falciparum genome.
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                Author and article information

                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group
                2041-1723
                22 December 2015
                2015
                : 6
                : 10111
                Affiliations
                [1 ]Department of Biological Sciences, National University of Singapore , Singapore 117543, Singapore
                [2 ]The State Key Laboratory of Pharmaceutical Biotechnology, College of Life Sciences, Nanjing University , Nanjing 210023, China
                [3 ]Interdisciplinary Research Group in Infectious Diseases, Singapore-MIT Alliance for Research & Technology (SMART) , Singapore 138602, Singapore
                [4 ]Department of Physiology, Yong Loo Lin School of Medicine, National University of Singapore , Singapore 117597, Singapore
                [5 ]Department of Chemical and Biomolecular Engineering, National University of Singapore , Singapore 117585, Singapore
                [6 ]Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore , Singapore 117545, Singapore
                [7 ]NUS Environmental Research Institute , Singapore 117411, Singapore
                [8 ]Department of Anaesthesiology, Singapore General Hospital , Singapore 169608, Singapore
                [9 ]School of Traditional Chinese Medicine, Southern Medical University , Guangzhou 510515, China
                [10 ]College of Life Science and Technology, Beijing University of Chemical Technology , Beijing 100029, China
                [11 ]Department of Biomedical Engineering, National University of Singapore , Singapore 117583, Singapore
                [12 ]Department of Mechanical Engineering, National University of Singapore , Singapore 117575, Singapore
                Author notes
                [*]

                These authors contributed equally to this work.

                Author information
                http://orcid.org/0000-0002-8360-7689
                http://orcid.org/0000-0001-9620-2405
                Article
                ncomms10111
                10.1038/ncomms10111
                4703832
                26694030
                16002db2-24d9-4e2c-8181-bb7c90cd0282
                Copyright © 2015, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.

                This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

                History
                : 10 March 2015
                : 04 November 2015
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