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      Bacillus velezensis FZB42 in 2018: The Gram-Positive Model Strain for Plant Growth Promotion and Biocontrol

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          Abstract

          Bacillus velezensis FZB42, the model strain for Gram-positive plant-growth-promoting and biocontrol rhizobacteria, has been isolated in 1998 and sequenced in 2007. In order to celebrate these anniversaries, we summarize here the recent knowledge about FZB42. In last 20 years, more than 140 articles devoted to FZB42 have been published. At first, research was mainly focused on antimicrobial compounds, apparently responsible for biocontrol effects against plant pathogens, recent research is increasingly directed to expression of genes involved in bacteria–plant interaction, regulatory small RNAs (sRNAs), and on modification of enzymes involved in synthesis of antimicrobial compounds by processes such as acetylation and malonylation. Till now, 13 gene clusters involved in non-ribosomal and ribosomal synthesis of secondary metabolites with putative antimicrobial action have been identified within the genome of FZB42. These gene clusters cover around 10% of the whole genome. Antimicrobial compounds suppress not only growth of plant pathogenic bacteria and fungi, but could also stimulate induced systemic resistance (ISR) in plants. It has been found that besides secondary metabolites also volatile organic compounds are involved in the biocontrol effect exerted by FZB42 under biotic (plant pathogens) and abiotic stress conditions. In order to facilitate easy access to the genomic data, we have established an integrating data bank ‘AmyloWiki’ containing accumulated information about the genes present in FZB42, available mutant strains, and other aspects of FZB42 research, which is structured similar as the famous SubtiWiki data bank.

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          Most cited references67

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          Regulatory RNAs in bacteria.

          Bacteria possess numerous and diverse means of gene regulation using RNA molecules, including mRNA leaders that affect expression in cis, small RNAs that bind to proteins or base pair with target RNAs, and CRISPR RNAs that inhibit the uptake of foreign DNA. Although examples of RNA regulators have been known for decades in bacteria, we are only now coming to a full appreciation of their importance and prevalence. Here, we review the known mechanisms and roles of regulatory RNAs, highlight emerging themes, and discuss remaining questions.
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            The MetaCyc database of metabolic pathways and enzymes

            Abstract MetaCyc (https://MetaCyc.org) is a comprehensive reference database of metabolic pathways and enzymes from all domains of life. It contains more than 2570 pathways derived from >54 000 publications, making it the largest curated collection of metabolic pathways. The data in MetaCyc is strictly evidence-based and richly curated, resulting in an encyclopedic reference tool for metabolism. MetaCyc is also used as a knowledge base for generating thousands of organism-specific Pathway/Genome Databases (PGDBs), which are available in the BioCyc (https://BioCyc.org) and other PGDB collections. This article provides an update on the developments in MetaCyc during the past two years, including the expansion of data and addition of new features.
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              Enhanced plant growth by siderophores produced by plant growth-promoting rhizobacteria

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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                16 October 2018
                2018
                : 9
                : 2491
                Affiliations
                [1] 1Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University , Nanjing, China
                [2] 2Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics , Nanjing, China
                [3] 3Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, and Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education , Nanjing, China
                [4] 4Institut für Biologie, Humboldt Universität Berlin , Berlin, Germany
                [5] 5Nord Reet UG , Greifswald, Germany
                Author notes

                Edited by: Essaid Ait Barka, Université de Reims Champagne-Ardenne, France

                Reviewed by: Gerardo Puopolo, Fondazione Edmund Mach, Italy; Bhim Pratap Singh, Mizoram University, India

                This article was submitted to Plant Microbe Interactions, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2018.02491
                6198173
                30386322
                fd198c0f-5cc7-48f2-9a2a-65a686526e31
                Copyright © 2018 Fan, Wang, Song, Ding, Wu, Wu, Gao and Borriss.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 15 June 2018
                : 28 September 2018
                Page count
                Figures: 4, Tables: 1, Equations: 0, References: 93, Pages: 14, Words: 0
                Funding
                Funded by: National Natural Science Foundation of China 10.13039/501100001809
                Funded by: Natural Science Foundation of Jiangsu Province 10.13039/501100004608
                Categories
                Microbiology
                Review

                Microbiology & Virology
                bacillus velezensis,fzb42,amylowiki,induced systemic resistance (isr),non-ribosomal synthesized lipopeptides (nrps),non-ribosomal synthesized polyketides (pks),volatiles,plant growth promoting bacteria (pgpr)

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