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      In-depth analysis of N 2O fluxes in tropical forest soils of the Congo Basin combining isotope and functional gene analysis

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          Abstract

          Primary tropical forests generally exhibit large gaseous nitrogen (N) losses, occurring as nitric oxide (NO), nitrous oxide (N 2O) or elemental nitrogen (N 2). The release of N 2O is of particular concern due to its high global warming potential and destruction of stratospheric ozone. Tropical forest soils are predicted to be among the largest natural sources of N 2O; however, despite being the world’s second-largest rainforest, measurements of gaseous N-losses from forest soils of the Congo Basin are scarce. In addition, long-term studies investigating N 2O fluxes from different forest ecosystem types (lowland and montane forests) are scarce. In this study we show that fluxes measured in the Congo Basin were lower than fluxes measured in the Neotropics, and in the tropical forests of Australia and South East Asia. In addition, we show that despite different climatic conditions, average annual N 2O fluxes in the Congo Basin’s lowland forests (0.97 ± 0.53 kg N ha −1 year −1) were comparable to those in its montane forest (0.88 ± 0.97 kg N ha −1 year −1). Measurements of soil pore air N 2O isotope data at multiple depths suggests that a microbial reduction of N 2O to N 2 within the soil may account for the observed low surface N 2O fluxes and low soil pore N 2O concentrations. The potential for microbial reduction is corroborated by a significant abundance and expression of the gene nosZ in soil samples from both study sites. Although isotopic and functional gene analyses indicate an enzymatic potential for complete denitrification, combined gaseous N-losses (N 2O, N 2) are unlikely to account for the missing N-sink in these forests. Other N-losses such as NO, N 2 via Feammox or hydrological particulate organic nitrogen export could play an important role in soils of the Congo Basin and should be the focus of future research.

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          Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

          Signaling through the Ror2 receptor tyrosine kinase promotes invadopodia formation for tumor invasion. Here, we identify intraflagellar transport 20 (IFT20) as a new target of this signaling in tumors that lack primary cilia, and find that IFT20 mediates the ability of Ror2 signaling to induce the invasiveness of these tumors. We also find that IFT20 regulates the nucleation of Golgi-derived microtubules by affecting the GM130-AKAP450 complex, which promotes Golgi ribbon formation in achieving polarized secretion for cell migration and invasion. Furthermore, IFT20 promotes the efficiency of transport through the Golgi complex. These findings shed new insights into how Ror2 signaling promotes tumor invasiveness, and also advance the understanding of how Golgi structure and transport can be regulated.
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            Nitrous oxide emissions from soils: how well do we understand the processes and their controls?

            Although it is well established that soils are the dominating source for atmospheric nitrous oxide (N2O), we are still struggling to fully understand the complexity of the underlying microbial production and consumption processes and the links to biotic (e.g. inter- and intraspecies competition, food webs, plant–microbe interaction) and abiotic (e.g. soil climate, physics and chemistry) factors. Recent work shows that a better understanding of the composition and diversity of the microbial community across a variety of soils in different climates and under different land use, as well as plant–microbe interactions in the rhizosphere, may provide a key to better understand the variability of N2O fluxes at the soil–atmosphere interface. Moreover, recent insights into the regulation of the reduction of N2O to dinitrogen (N2) have increased our understanding of N2O exchange. This improved process understanding, building on the increased use of isotope tracing techniques and metagenomics, needs to go along with improvements in measurement techniques for N2O (and N2) emission in order to obtain robust field and laboratory datasets for different ecosystem types. Advances in both fields are currently used to improve process descriptions in biogeochemical models, which may eventually be used not only to test our current process understanding from the microsite to the field level, but also used as tools for up-scaling emissions to landscapes and regions and to explore feedbacks of soil N2O emissions to changes in environmental conditions, land management and land use.
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              Nutrient Cycling in Moist Tropical Forest

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                Author and article information

                Contributors
                nora.gallarotti@erdw.ethz.ch
                Journal
                ISME J
                ISME J
                The ISME Journal
                Nature Publishing Group UK (London )
                1751-7362
                1751-7370
                25 May 2021
                25 May 2021
                November 2021
                : 15
                : 11
                : 3357-3374
                Affiliations
                [1 ]GRID grid.5801.c, ISNI 0000 0001 2156 2780, Department of Environmental Systems Science, , Swiss Federal Institute of Technology, ETH Zurich, ; Zurich, Switzerland
                [2 ]GRID grid.4391.f, ISNI 0000 0001 2112 1969, College of Agricultural Sciences, , Oregon State University, ; Corvallis, OR USA
                [3 ]GRID grid.449717.8, ISNI 0000 0004 5374 269X, School of Earth, Environmental, and Marine Sciences, , University of Texas Rio Grande Valley, ; Edinburg, TX USA
                [4 ]GRID grid.5342.0, ISNI 0000 0001 2069 7798, Isotope Bioscience Laboratory, Faculty of Bioscience Engineering, , Ghent University, ; Ghent, Belgium
                [5 ]GRID grid.5342.0, ISNI 0000 0001 2069 7798, Computational and Applied Vegetation Ecology Lab, Department of Environment, , Ghent University, ; Ghent, Belgium
                [6 ]GRID grid.7942.8, ISNI 0000 0001 2294 713X, Earth and Life Institute, , Université Catholique de Louvain, ; Louvain, Belgium
                [7 ]GRID grid.7354.5, ISNI 0000 0001 2331 3059, Laboratory for Air Pollution/Environmental Technology, Swiss Federal Laboratories of Materials Science and Technology, ; Empa Dubendorf, Switzerland
                [8 ]GRID grid.442836.f, ISNI 0000 0004 7477 7760, Département de Biologie, , Université Officielle de Bukavu, ; Bukavu, Democratic Republic of Congo
                [9 ]GRID grid.5342.0, ISNI 0000 0001 2069 7798, Department of Green Chemistry and Technology, , Ghent University, ; Ghent, Belgium
                [10 ]GRID grid.442834.d, ISNI 0000 0004 6011 4325, Département d’ Agronomie, , Université Catholique de Bukavu, ; Bukavu, Democratic Republic of Congo
                Author information
                http://orcid.org/0000-0003-2993-8804
                http://orcid.org/0000-0002-6355-118X
                http://orcid.org/0000-0003-0978-6639
                http://orcid.org/0000-0002-7564-974X
                http://orcid.org/0000-0002-9799-1001
                Article
                1004
                10.1038/s41396-021-01004-x
                8528805
                34035444
                fcfa945d-469c-4827-84f5-7be131661265
                © The Author(s) 2021

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 29 July 2020
                : 14 April 2021
                : 30 April 2021
                Funding
                Funded by: ETH core funding
                Categories
                Article
                Custom metadata
                © The Author(s), under exclusive licence to International Society for Microbial Ecology 2021

                Microbiology & Virology
                microbiology,biogeochemistry
                Microbiology & Virology
                microbiology, biogeochemistry

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