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      Knockout rat models mimicking human atherosclerosis created by Cpf1-mediated gene targeting

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          Abstract

          The rat is a time-honored traditional experimental model animal, but its use is limited due to the difficulty of genetic modification. Although engineered endonucleases enable us to manipulate the rat genome, it is not known whether the newly identified endonuclease Cpf1 system is applicable to rats. Here we report the first application of CRISPR-Cpf1 in rats and investigate whether Apoe knockout rat can be used as an atherosclerosis model. We generated Apoe- and/or Ldlr-deficient rats via CRISPR-Cpf1 system, characterized by high efficiency, successful germline transmission, multiple gene targeting capacity, and minimal off-target effect. The resulting Apoe knockout rats displayed hyperlipidemia and aortic lesions. In partially ligated carotid arteries of rats and mice fed with high-fat diet, in contrast to Apoe knockout mice showing atherosclerotic lesions, Apoe knockout rats showed only adventitial immune infiltrates comprising T lymphocytes and mainly macrophages with no plaque. In addition, adventitial macrophage progenitor cells (AMPCs) were more abundant in Apoe knockout rats than in mice. Our data suggest that the Cpf1 system can target single or multiple genes efficiently and specifically in rats with genetic heritability and that Apoe knockout rats may help understand initial-stage atherosclerosis.

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          Most cited references33

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          Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells.

          Programmable clustered regularly interspaced short palindromic repeats (CRISPR) Cpf1 endonucleases are single-RNA-guided (crRNA) enzymes that recognize thymidine-rich protospacer-adjacent motif (PAM) sequences and produce cohesive double-stranded breaks (DSBs). Genome editing with CRISPR-Cpf1 endonucleases could provide an alternative to CRISPR-Cas9 endonucleases, but the determinants of targeting specificity are not well understood. Using mismatched crRNAs we found that Cpf1 could tolerate single or double mismatches in the 3' PAM-distal region, but not in the 5' PAM-proximal region. Genome-wide analysis of cleavage sites in vitro for eight Cpf1 nucleases using Digenome-seq revealed that there were 6 (LbCpf1) and 12 (AsCpf1) cleavage sites per crRNA in the human genome, fewer than are present for Cas9 nucleases (>90). Most Cpf1 off-target cleavage sites did not produce mutations in cells. We found mismatches in either the 3' PAM-distal region or in the PAM sequence of 12 off-target sites that were validated in vivo. Off-target effects were completely abrogated by using preassembled, recombinant Cpf1 ribonucleoproteins.
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            Knockout rats via embryo microinjection of zinc-finger nucleases.

            The toolbox of rat genetics currently lacks the ability to introduce site-directed, heritable mutations into the genome to create knockout animals. By using engineered zinc-finger nucleases (ZFNs) designed to target an integrated reporter and two endogenous rat genes, Immunoglobulin M (IgM) and Rab38, we demonstrate that a single injection of DNA or messenger RNA encoding ZFNs into the one-cell rat embryo leads to a high frequency of animals carrying 25 to 100% disruption at the target locus. These mutations are faithfully and efficiently transmitted through the germline. Our data demonstrate the feasibility of targeted gene disruption in multiple rat strains within 4 months time, paving the way to a humanized monoclonal antibody platform and additional human disease models.
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              Heritable gene targeting in the mouse and rat using a CRISPR-Cas system.

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                Author and article information

                Contributors
                lsw@amc.seoul.kr
                yhsung@amc.seoul.kr
                ijbaek@amc.seoul.kr
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                22 February 2019
                22 February 2019
                2019
                : 9
                : 2628
                Affiliations
                [1 ]ISNI 0000 0001 0842 2126, GRID grid.413967.e, ConveRgence mEDIcine research cenTer (CREDIT), , Asan Institute for Life Sciences, Asan Medical Center, ; Seoul, Republic of Korea
                [2 ]ISNI 0000 0001 0842 2126, GRID grid.413967.e, Biomedical Research Center, Asan Institute for Life Sciences, , Asan Medical Center, ; Seoul, Republic of Korea
                [3 ]ISNI 0000 0000 9611 0917, GRID grid.254229.a, College of Veterinary Medicine, , Chungbuk National University, ; Cheongju, Republic of Korea
                [4 ]ISNI 0000 0001 0842 2126, GRID grid.413967.e, Department of Convergence Medicine, , University of Ulsan College of Medicine, Asan Medical Center, ; Seoul, Republic of Korea
                [5 ]ISNI 0000 0001 0842 2126, GRID grid.413967.e, Department of Cardiology, , University of Ulsan College of Medicine, Asan Medical Center, ; Seoul, Republic of Korea
                [6 ]ISNI 0000 0001 0842 2126, GRID grid.413967.e, Department of Radiation Oncology, , University of Ulsan College of Medicine, Asan Medical Center, ; Seoul, Republic of Korea
                Article
                38732
                10.1038/s41598-019-38732-2
                6385241
                30796231
                e2f41ab8-15fc-4bf4-b8be-970e07cf2f54
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 23 September 2018
                : 8 January 2019
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100003725, National Research Foundation of Korea (NRF);
                Award ID: 2017R1A2B4011456
                Award ID: 2016R1D1A1A02937458
                Award ID: 2017M3A9D5A01052448
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100005006, Asan Institute for Life Sciences, Asan Medical Center;
                Award ID: 2016-695
                Award ID: 2016-716
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100003630, Nuclear Safety and Security Commission (NSSC);
                Award ID: 1403016
                Award Recipient :
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