6
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      The mechanism of genome replication and transcription in bunyaviruses

      review-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Bunyaviruses are negative sense, single-strand RNA viruses that infect a wide range of vertebrate, invertebrate and plant hosts. WHO lists three bunyavirus diseases as priority diseases requiring urgent development of medical countermeasures highlighting their high epidemic potential. While the viral large (L) protein containing the RNA-dependent RNA polymerase is a key enzyme in the viral replication cycle and therefore a suitable drug target, our knowledge on the structure and activities of this multifunctional protein has, until recently, been very limited. However, in the last few years, facilitated by the technical advances in the field of cryogenic electron microscopy, many structures of bunyavirus L proteins have been solved. These structures significantly enhance our mechanistic understanding of bunyavirus genome replication and transcription processes and highlight differences and commonalities between the L proteins of different bunyavirus families. Here, we provide a review of our current understanding of genome replication and transcription in bunyaviruses with a focus on the viral L protein. Further, we compare within bunyaviruses and with the related influenza virus polymerase complex and highlight open questions.

          Related collections

          Most cited references155

          • Record: found
          • Abstract: found
          • Article: not found

          UCSF ChimeraX : Structure visualization for researchers, educators, and developers

          UCSF ChimeraX is the next-generation interactive visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX brings (a) significant performance and graphics enhancements; (b) new implementations of Chimera's most highly used tools, many with further improvements; (c) several entirely new analysis features; (d) support for new areas such as virtual reality, light-sheet microscopy, and medical imaging data; (e) major ease-of-use advances, including toolbars with icons to perform actions with a single click, basic "undo" capabilities, and more logical and consistent commands; and (f) an app store for researchers to contribute new tools. ChimeraX includes full user documentation and is free for noncommercial use, with downloads available for Windows, Linux, and macOS from https://www.rbvi.ucsf.edu/chimerax.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Jalview Version 2—a multiple sequence alignment editor and analysis workbench

            Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org Contact: g.j.barton@dundee.ac.uk
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Structural insight into cap-snatching and RNA synthesis by influenza polymerase.

              Influenza virus polymerase uses a capped primer, derived by 'cap-snatching' from host pre-messenger RNA, to transcribe its RNA genome into mRNA and a stuttering mechanism to generate the poly(A) tail. By contrast, genome replication is unprimed and generates exact full-length copies of the template. Here we use crystal structures of bat influenza A and human influenza B polymerases (FluA and FluB), bound to the viral RNA promoter, to give mechanistic insight into these distinct processes. In the FluA structure, a loop analogous to the priming loop of flavivirus polymerases suggests that influenza could initiate unprimed template replication by a similar mechanism. Comparing the FluA and FluB structures suggests that cap-snatching involves in situ rotation of the PB2 cap-binding domain to direct the capped primer first towards the endonuclease and then into the polymerase active site. The polymerase probably undergoes considerable conformational changes to convert the observed pre-initiation state into the active initiation and elongation states.
                Bookmark

                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Pathog
                PLoS Pathog
                plos
                PLOS Pathogens
                Public Library of Science (San Francisco, CA USA )
                1553-7366
                1553-7374
                12 January 2023
                January 2023
                : 19
                : 1
                : e1011060
                Affiliations
                [1 ] University Grenoble Alpes, CNRS, CEA, IBS, Grenoble, France
                [2 ] Institut Universitaire de France (IUF), Paris, France
                [3 ] Bernhard Nocht Institute for Tropical Medicine (BNITM), Hamburg, Germany
                [4 ] Centre for Structural Systems Biology, Hamburg, Germany
                [5 ] European Molecular Biology Laboratory, Grenoble, France
                [6 ] Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Discovery Research ScreeningPort, Hamburg, Germany
                Boston University, UNITED STATES
                Author notes

                The authors declare that no competing interests exist.

                Author information
                https://orcid.org/0000-0003-2986-936X
                Article
                PPATHOGENS-D-22-01704
                10.1371/journal.ppat.1011060
                9836281
                36634042
                e20997a8-21f0-46d4-bb6d-dfeb7259ff8a
                © 2023 Malet et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                Page count
                Figures: 7, Tables: 0, Pages: 29
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100002347, Bundesministerium für Bildung und Forschung;
                Award ID: 01KI2019
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001664, Leibniz-Gemeinschaft;
                Award ID: K72/2017
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001664, Leibniz-Gemeinschaft;
                Award ID: K72/2017
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001665, Agence Nationale de la Recherche;
                Award ID: ANR-19-CE11-0024-02
                Award Recipient :
                Funded by: Institut Universitaire de France
                Award Recipient :
                This work was supported by the German Federal Ministry of Education and Research (grant 01KI2019 to M.R.), the Leibniz Association’s Leibniz competition programme (grant K72/2017 to S.C. and M.R.), the French National Research Agency (grant ANR-19-CE11-0024-02 to H.M.) and the Institut Universitaire de France (endowment to H.M.). The funders had no role in the analysis, decision to publish, or preparation of the manuscript.
                Categories
                Review
                Biology and life sciences
                Molecular biology
                Macromolecular structure analysis
                RNA structure
                Biology and life sciences
                Biochemistry
                Nucleic acids
                RNA
                RNA structure
                Biology and Life Sciences
                Microbiology
                Virology
                Viral Replication
                Biology and life sciences
                Biochemistry
                Proteins
                DNA-binding proteins
                Polymerases
                Biology and life sciences
                Organisms
                Viruses
                RNA viruses
                Orthomyxoviruses
                Influenza Viruses
                Biology and Life Sciences
                Microbiology
                Medical Microbiology
                Microbial Pathogens
                Viral Pathogens
                Orthomyxoviruses
                Influenza Viruses
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Pathogens
                Microbial Pathogens
                Viral Pathogens
                Orthomyxoviruses
                Influenza Viruses
                Biology and Life Sciences
                Organisms
                Viruses
                Viral Pathogens
                Orthomyxoviruses
                Influenza Viruses
                Biology and Life Sciences
                Microbiology
                Virology
                Viral Structure
                Biology and Life Sciences
                Molecular Biology
                Macromolecular Structure Analysis
                Protein Structure
                Biology and Life Sciences
                Biochemistry
                Proteins
                Protein Structure
                Biology and Life Sciences
                Biochemistry
                Nucleotides
                Biology and life sciences
                Organisms
                Viruses
                RNA viruses
                Bunyaviruses
                Biology and Life Sciences
                Microbiology
                Medical Microbiology
                Microbial Pathogens
                Viral Pathogens
                Bunyaviruses
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Pathogens
                Microbial Pathogens
                Viral Pathogens
                Bunyaviruses
                Biology and Life Sciences
                Organisms
                Viruses
                Viral Pathogens
                Bunyaviruses

                Infectious disease & Microbiology
                Infectious disease & Microbiology

                Comments

                Comment on this article