Contributors
Felipe Gomes Naveca: Role: Data curationRole: Funding acquisitionRole: InvestigationRole: Project administrationRole:
SupervisionRole: Writing – original draftRole: Writing – review & editing
Ingra Claro: Role: Data curationRole: Formal analysisRole: InvestigationRole: SupervisionRole:
Writing – review & editing
Marta Giovanetti: Role: Data curationRole: Formal analysisRole: InvestigationRole: Supervision
Jaqueline Goes de Jesus: Role: Data curationRole: Formal analysisRole: MethodologyRole: Supervision
Joilson Xavier:
ORCID: http://orcid.org/0000-0003-3916-2018
Role: Formal analysisRole: InvestigationRole: Methodology
Felipe Campos de Melo Iani:
ORCID: http://orcid.org/0000-0002-3629-8529
Role: Formal analysisRole: InvestigationRole: Methodology
Valdinete Alves do Nascimento: Role: InvestigationRole: Project administrationRole: ResourcesRole: Validation
Victor Costa de Souza: Role: Data curationRole: InvestigationRole: MethodologyRole: Validation
Paola Paz Silveira: Role: Formal analysisRole: InvestigationRole: Methodology
José Lourenço:
ORCID: http://orcid.org/0000-0002-9318-2581
Role: Formal analysisRole: InvestigationRole: Writing – review & editing
Mauricio Santillana: Role: Formal analysisRole: MethodologyRole: ValidationRole: Writing – review & editing
Moritz U. G. Kraemer: Role: InvestigationRole: ValidationRole: Writing – review & editing
Josh Quick: Role: InvestigationRole: Methodology
Sarah C. Hill: Role: ConceptualizationRole: MethodologyRole: Project administrationRole: Writing
– review & editing
Julien Thézé: Role: Data curationRole: Formal analysisRole: MethodologyRole: Validation
Rodrigo Dias de Oliveira Carvalho: Role: Formal analysisRole: Investigation
Vasco Azevedo: Role: ConceptualizationRole: Writing – review & editing
Flavia Cristina da Silva Salles: Role: Data curationRole: MethodologyRole: Validation
Márcio Roberto Teixeira Nunes: Role: ConceptualizationRole: InvestigationRole: Writing – review & editing
Poliana da Silva Lemos:
ORCID: http://orcid.org/0000-0003-1271-8549
Role: ConceptualizationRole: InvestigationRole: Writing – review & editing
Darlan da Silva Candido: Role: Formal analysisRole: InvestigationRole: Writing – review & editing
Glauco de Carvalho Pereira: Role: SupervisionRole: Writing – review & editing
Marluce Aparecida Assunção Oliveira: Role: Supervision
Cátia Alexandra Ribeiro Meneses: Role: Data curationRole: InvestigationRole: Writing – review & editing
Rodrigo Melo Maito: Role: Data curationRole: InvestigationRole: Writing – review & editing
Claudeth Rocha Santa Brígida Cunha: Role: Data curationRole: InvestigationRole: Writing – review & editing
Daniela Palha de Sousa Campos: Role: Data curationRole: InvestigationRole: Writing – review & editing
Marcia da Costa Castilho: Role: Data curationRole: InvestigationRole: Writing – review & editing
Thalita Caroline da Silva Siqueira: Role: InvestigationRole: Writing – review & editing
Tiza Matos Terra: Role: InvestigationRole: Writing – review & editing
Carlos F. Campelo de Albuquerque: Role: ConceptualizationRole: InvestigationRole: Writing – review & editing
Laura Nogueira da Cruz: Role: Data curationRole: Writing – review & editing
André Luis de Abreu: Role: Data curationRole: Writing – review & editing
Divino Valerio Martins: Role: Data curationRole: Writing – review & editing
Daniele Silva de Moraes Vanlume Simoes: Role: Data curationRole: Writing – review & editing
Renato Santana de Aguiar: Role: MethodologyRole: Writing – review & editing
Sérgio Luiz Bessa Luz: Role: Project administrationRole: Writing – review & editing
Nicholas Loman: Role: MethodologyRole: Writing – review & editing
Oliver G. Pybus: Role: ConceptualizationRole: SupervisionRole: Writing – review & editing
Ester C. Sabino: Role: ConceptualizationRole: SupervisionRole: Writing – review & editing
Osnei Okumoto: Role: ConceptualizationRole: SupervisionRole: Writing – review & editing
Luiz Carlos Junior Alcantara:
ORCID: http://orcid.org/0000-0002-6769-9931
Role: ConceptualizationRole: Data curationRole: Funding acquisitionRole: InvestigationRole:
Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole:
Writing – review & editing
Nuno Rodrigues Faria:
ORCID: http://orcid.org/0000-0001-8839-2798
Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole:
InvestigationRole: MethodologyRole: ResourcesRole: SoftwareRole: SupervisionRole:
ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review
& editing
Rebecca C. Christofferson: Role: Editor
Journal
Journal ID (nlm-ta): PLoS Negl Trop Dis
Journal ID (iso-abbrev): PLoS Negl Trop Dis
Journal ID (publisher-id): plos
Journal ID (pmc): plosntds
Title:
PLoS Neglected Tropical Diseases
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1935-2727
ISSN
(Electronic):
1935-2735
Publication date
(Electronic):
7
March
2019
Publication date Collection:
March
2019
Volume: 13
Issue: 3
Electronic Location Identifier: e0007065
Affiliations
[1
]
Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Instituto Leônidas
e Maria Deane, FIOCRUZ, Manaus, Brazil
[2
]
Instituto de Medicina Tropical e Faculdade de Medicina da Universidade de São Paulo,
São Paulo, Brazil
[3
]
Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil
[4
]
Laboratório de Genética Celular e Molecular, Instituto de Ciências Biológicas, Universidade
Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
[5
]
Laboratório de Patologia Experimental, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz,
Salvador, Bahia, Brazil
[6
]
Laboratório Central de Saúde Pública, Instituto Octávio Magalhães, FUNED, Belo Horizonte,
Minas Gerais, Brazil
[7
]
Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia,
Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
[8
]
Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom
[9
]
Harvard Medical School, Department of Pediatrics, Boston, MA, United States of America
[10
]
Computational Health Informatics Program, Boston Children’s Hospital, Boston, MA,
United States of America
[11
]
Computational Epidemiology Lab, Boston Children’s Hospital, Boston, MA, United States
of America
[12
]
Institute of Microbiology and Infection, University of Birmingham, Birmingham, United
Kingdom
[13
]
Evandro Chagas Institute, Brazilian Ministry of Health, Ananindeua, Brazil
[14
]
Laboratório Central de Saúde Pública, Boa Vista, Roraima, Brazil
[15
]
Superintendência de Vigilância em Saúde, Secretaria Municipal de Saúde de Boa Vista,
Roraima, Brazil
[16
]
Departamento de Virologia, Fundação de Medicina Tropical Doutor Heitor Vieira Dourado,
Manaus, Amazonas, Brazil
[17
]
Laboratório Central de Saúde Pública do Amazonas, Manaus, Amazonas, Brazil
[18
]
Organização Pan—Americana da Saúde/Organização Mundial da Saúde—(OPAS/OMS), Brasília-DF,
Brazil
[19
]
Secretaria de Vigilância em Saúde, Ministério da Saúde (SVS/MS), Brasília-DF, Brazil
Louisiana State University, UNITED STATES
Author notes
The authors declare no competing interests.
Author information
Article
Publisher ID:
PNTD-D-18-01912
DOI: 10.1371/journal.pntd.0007065
PMC ID: 6424459
PubMed ID: 30845267
SO-VID: db2bc92d-d3ef-4913-8b43-f2f3f7bcf73f
Copyright © © 2019 Naveca et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
History
Date
received
: 6
December
2018
Date
accepted
: 1
February
2019
Page count
Figures: 4,
Tables: 1,
Pages: 21
Funding
Funded by: funder-id http://dx.doi.org/10.13039/100004440, Wellcome Trust;
Award ID: 204311/Z/16/Z
Award Recipient
:
ORCID: http://orcid.org/0000-0001-8839-2798
Nuno Rodrigues Faria
Funded by: funder-id http://dx.doi.org/10.13039/501100003593, Conselho Nacional de Desenvolvimento Científico e Tecnológico;
Award ID: 440685/2016-8
Award Recipient
:
ORCID: http://orcid.org/0000-0002-6769-9931
Luiz Carlos Junior Alcantara
Funded by: funder-id http://dx.doi.org/10.13039/501100002322, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior;
Award ID: 88887.130716/2016-00
Award Recipient
:
ORCID: http://orcid.org/0000-0002-6769-9931
Luiz Carlos Junior Alcantara
The ZIBRA-2 project is funded by Conselho Nacional de Desenvolvimento Científico e
Tecnológico (grant 440685/2016-8) and Coordenação de Aperfeiçoamento de Pessoal de
Nível Superior (grant 88887.130716/2016-00). FGN is funded by Conselho Nacional de
Desenvolvimento Científico e Tecnológico (
http://www.cnpq.br, grant 440856/2016-7) and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
(
http://www.capes.gov.br, grants 88881.130825/2016-00 and 88887.130823/2016-00). L.C.J.A. is supported by
the EU’s Horizon 2020 Programme through ZIKAlliance (grant PRES-005-FEX-17-4-2-33).
N.R.F. is funded by a Royal Society and Wellcome Trust Sir Henry Dale Fellowship (204311/Z/16/Z),
internal GCRF grant 005073, and John Fell Research Fund grant 005166. This research
received funding from the ERC (grant agreement 614725-PATHPHYLODYN). MS was partially
supported by the National Institute of General Medical Sciences of the NIH (USA) under
award number R01GM130668. The funders had no role in study design, data collection
and analysis, decision to publish or preparation of the manuscript.
Categories
Subject:
Research Article
Subject:
Biology and life sciences
Subject:
Organisms
Subject:
Viruses
Subject:
RNA viruses
Subject:
Togaviruses
Subject:
Alphaviruses
Subject:
Chikungunya Virus
Subject:
Biology and Life Sciences
Subject:
Microbiology
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Medical Microbiology
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Microbial Pathogens
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Viral Pathogens
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Togaviruses
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Alphaviruses
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Chikungunya Virus
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Medicine and Health Sciences
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Pathology and Laboratory Medicine
Subject:
Pathogens
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Microbial Pathogens
Subject:
Viral Pathogens
Subject:
Togaviruses
Subject:
Alphaviruses
Subject:
Chikungunya Virus
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Viruses
Subject:
Viral Pathogens
Subject:
Togaviruses
Subject:
Alphaviruses
Subject:
Chikungunya Virus
Subject:
People and places
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Geographical locations
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South America
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Brazil
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Medicine and Health Sciences
Subject:
Tropical Diseases
Subject:
Neglected Tropical Diseases
Subject:
Chikungunya Infection
Subject:
Medicine and Health Sciences
Subject:
Infectious Diseases
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Viral Diseases
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Chikungunya Infection
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Medicine and Health Sciences
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Epidemiology
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Biology and Life Sciences
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Computational Biology
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Genome Analysis
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Genomics
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Genome Analysis
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Genome Analysis
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Genomic Libraries
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Genomic Libraries
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Public and Occupational Health
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Biology and Life Sciences
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Molecular Biology
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Molecular Biology Techniques
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Sequencing Techniques
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Genome Sequencing
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Research and Analysis Methods
Subject:
Molecular Biology Techniques
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Sequencing Techniques
Subject:
Genome Sequencing
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