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      Winter is coming–Temperature affects immune defenses and susceptibility to Batrachochytrium salamandrivorans

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          Abstract

          Environmental temperature is a key factor driving various biological processes, including immune defenses and host-pathogen interactions. Here, we evaluated the effects of environmental temperature on the pathogenicity of the emerging fungal pathogen, Batrachochytrium salamandrivorans ( Bsal), using controlled laboratory experiments, and measured components of host immune defense to identify regulating mechanisms. We found that adult and juvenile Notophthalmus viridescens died faster due to Bsal chytridiomycosis at 14°C than at 6 and 22°C. Pathogen replication rates, total available proteins on the skin, and microbiome composition likely drove these relationships. Temperature-dependent skin microbiome composition in our laboratory experiments matched seasonal trends in wild N. viridescens, adding validity to these results. We also found that hydrophobic peptide production after two months post-exposure to Bsal was reduced in infected animals compared to controls, perhaps due to peptide release earlier in infection or impaired granular gland function in diseased animals. Using our temperature-dependent susceptibility results, we performed a geographic analysis that revealed N. viridescens populations in the northeastern United States and southeastern Canada are at greatest risk for Bsal invasion, which shifted risk north compared to previous assessments. Our results indicate that environmental temperature will play a key role in the epidemiology of Bsal and provide evidence that temperature manipulations may be a viable disease management strategy.

          Author summary

          In 2010, a new skin-eating fungus, Batrachochytrium salamandrivorans ( Bsal), was discovered killing salamanders in the Netherlands. Since then, the pathogen has spread to other European countries. Bsal is believed to be from Asia and is being translocated through the international trade of amphibians. To our knowledge, Bsal has not arrived to North America. As a proactive strategy for disease control, we evaluated how a range of environmental temperatures in North America could affect invasion risk of Bsal into a widely distributed salamander species, the eastern newt ( Notophthalmus viridescens). Our results show that northeastern USA, southeastern Canada, and the higher elevations of the Appalachian Mountains have the greatest likelihood of Bsal invasion, when temperature-dependent susceptibility is included in risk analyses. Changes in eastern newt susceptibility to Bsal infection associated with temperature are likely an interaction between pathogen replication rate and host immune defenses, including changes in skin microbiome composition and the host’s ability to produce Bsal-killing proteins on the skin. Our study provides new insights into how latitude, elevation and season can impact the epidemiology of Bsal, and suggests that strategies that manipulate microclimate of newt habitats could be useful in managing Bsal outbreaks and that climate change will impact Bsal invasion probability.

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            We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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              Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Pathog
                PLoS Pathog
                plos
                plospath
                PLoS Pathogens
                Public Library of Science (San Francisco, CA USA )
                1553-7366
                1553-7374
                18 February 2021
                February 2021
                : 17
                : 2
                : e1009234
                Affiliations
                [1 ] Center for Wildlife Health, University of Tennessee Institute of Agriculture, Knoxville, Tennessee, United States of America
                [2 ] Department of Biology, University of Massachusetts Boston, Boston, Massachusetts, United States of America
                [3 ] Departments of Pathology, Microbiology and Immunology and of Pediatrics, Vanderbilt University School of Medicine and Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, United States of America
                [4 ] Department of Biomedical and Diagnostic Sciences, College of Veterinary Medicine, University of Tennessee, Knoxville, Tennessee, United States of America
                Chinese Academy of Sciences, CHINA
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0001-6187-9010
                https://orcid.org/0000-0002-5359-002X
                https://orcid.org/0000-0001-9182-8388
                https://orcid.org/0000-0003-4559-1046
                https://orcid.org/0000-0002-8544-174X
                https://orcid.org/0000-0001-8243-9217
                Article
                PPATHOGENS-D-20-02036
                10.1371/journal.ppat.1009234
                7891748
                33600433
                dac79c44-88b7-4b03-b69c-d2048c15e8ea
                © 2021 Carter et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 12 September 2020
                : 8 December 2020
                Page count
                Figures: 8, Tables: 0, Pages: 20
                Funding
                Funded by: National Science Foundation Division of Environmental Biology
                Award ID: 1814520
                Award Recipient :
                Funded by: National Science Foundation Division of Environmental Biology
                Award ID: 1814520
                Award Recipient :
                Funded by: National Science Foundation Division of Environmental Biology
                Award ID: 1814520
                Award Recipient :
                Funded by: National Science Foundation Division of Environmental Biology
                Award ID: 1814520
                Award Recipient :
                Funded by: U.S. Department of Defense Strategic Environmental Research and Development Program
                Award ID: W912HQ-16-C-0033
                Award Recipient :
                Funded by: U.S. Department of Defense Strategic Environmental Research and Development Program
                Award ID: W912HQ-16-C-0033
                Award Recipient :
                Funded by: U.S. Department of Agriculture National Institute of Food and Agriculture
                Award ID: 1012932
                Award Recipient :
                Funded by: U.S. Department of Agriculture National Institute of Food and Agriculture
                Award ID: 1012932
                Award Recipient :
                MJG, DLM, DCW, and LAR-S received funds from the National Science Foundation Division of Environmental Biology (Ecology and Evolution of Infectious Diseases Program, https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=5269) Grant #1814520. DCW and LAR-S were partially supported by the U.S. Department of Defense Strategic Environmental Research and Development Program ( https://www.serdp-estcp.org/) Grant #W912HQ-16-C-0033). MJG and DLM were supported by U.S. Department of Agriculture National Institute of Food and Agriculture ( https://nifa.usda.gov/program/hatch-act-1887-multistate-research-fund), Hatch Project #1012932. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Microbiology
                Medical Microbiology
                Microbial Pathogens
                Fungal Pathogens
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Pathogens
                Microbial Pathogens
                Fungal Pathogens
                Biology and Life Sciences
                Mycology
                Fungal Pathogens
                Biology and Life Sciences
                Microbiology
                Medical Microbiology
                Microbiome
                Biology and Life Sciences
                Genetics
                Genomics
                Microbial Genomics
                Microbiome
                Biology and Life Sciences
                Microbiology
                Microbial Genomics
                Microbiome
                Biology and Life Sciences
                Population Biology
                Population Metrics
                Death Rates
                Medicine and Health Sciences
                Epidemiology
                Medical Risk Factors
                Biology and Life Sciences
                Physiology
                Physiological Processes
                Secretion
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Pathogens
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Amphibians
                Biology and Life Sciences
                Zoology
                Animals
                Vertebrates
                Amphibians
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Amphibians
                Caudata
                Salamanders
                Biology and Life Sciences
                Zoology
                Animals
                Vertebrates
                Amphibians
                Caudata
                Salamanders
                Custom metadata
                All data not provided in the manuscript is available https://doi.org/10.7290/t7SaLlfxxe.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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