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      Kinetic insights into the peroxygenase activity of cellulose-active lytic polysaccharide monooxygenases (LPMOs)

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          Abstract

          Lytic polysaccharide monooxygenases (LPMOs) are widely distributed in Nature, where they catalyze the hydroxylation of glycosidic bonds in polysaccharides. Despite the importance of LPMOs in the global carbon cycle and in industrial biomass conversion, the catalytic properties of these monocopper enzymes remain enigmatic. Strikingly, there is a remarkable lack of kinetic data, likely due to a multitude of experimental challenges related to the insoluble nature of LPMO substrates, like cellulose and chitin, and to the occurrence of multiple side reactions. Here, we employed competition between well characterized reference enzymes and LPMOs for the H 2O 2 co-substrate to kinetically characterize LPMO-catalyzed cellulose oxidation. LPMOs of both bacterial and fungal origin showed high peroxygenase efficiencies, with k cat/ K mH2O2 values in the order of 10 5–10 6 M −1 s −1. Besides providing crucial insight into the cellulolytic peroxygenase reaction, these results show that LPMOs belonging to multiple families and active on multiple substrates are true peroxygenases.

          Abstract

          Lytic polysaccharide monooxygenases (LPMOs) catalyze the hydroxylation of glycosidic bonds in polysaccharides, but the catalytic properties of these monocopper enzymes remain poorly characterized. Here authors employ competition between reference enzymes and LPMOs for the H 2O 2 co-substrate to kinetically characterize LPMO-catalyzed cellulose oxidation.

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          Most cited references62

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          The carbohydrate-active enzymes database (CAZy) in 2013

          The Carbohydrate-Active Enzymes database (CAZy; http://www.cazy.org) provides online and continuously updated access to a sequence-based family classification linking the sequence to the specificity and 3D structure of the enzymes that assemble, modify and breakdown oligo- and polysaccharides. Functional and 3D structural information is added and curated on a regular basis based on the available literature. In addition to the use of the database by enzymologists seeking curated information on CAZymes, the dissemination of a stable nomenclature for these enzymes is probably a major contribution of CAZy. The past few years have seen the expansion of the CAZy classification scheme to new families, the development of subfamilies in several families and the power of CAZy for the analysis of genomes and metagenomes. This article outlines the changes that have occurred in CAZy during the past 5 years and presents our novel effort to display the resolution and the carbohydrate ligands in crystallographic complexes of CAZymes.
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            Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

            Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery.
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              An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides.

              Efficient enzymatic conversion of crystalline polysaccharides is crucial for an economically and environmentally sustainable bioeconomy but remains unfavorably inefficient. We describe an enzyme that acts on the surface of crystalline chitin, where it introduces chain breaks and generates oxidized chain ends, thus promoting further degradation by chitinases. This enzymatic activity was discovered and further characterized by using mass spectrometry and chromatographic separation methods to detect oxidized products generated in the absence or presence of H(2)(18)O or (18)O(2). There are strong indications that similar enzymes exist that work on cellulose. Our findings not only demonstrate the existence of a hitherto unknown enzyme activity but also provide new avenues toward more efficient enzymatic conversion of biomass.
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                Author and article information

                Contributors
                priit.valjamae@ut.ee
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                13 November 2020
                13 November 2020
                2020
                : 11
                : 5786
                Affiliations
                [1 ]GRID grid.10939.32, ISNI 0000 0001 0943 7661, Institute of Molecular and Cell Biology, , University of Tartu, ; Tartu, Estonia
                [2 ]GRID grid.19477.3c, ISNI 0000 0004 0607 975X, Faculty of Chemistry, Biotechnology and Food Science, , NMBU—Norwegian University of Life Sciences, ; Ås, Norway
                [3 ]GRID grid.5399.6, ISNI 0000 0001 2176 4817, INRAE, Aix Marseille University, UMR1163 Biodiversité et Biotechnologie Fongiques, ; 13009 Marseille, France
                Author information
                http://orcid.org/0000-0001-8354-3892
                http://orcid.org/0000-0002-9220-8743
                http://orcid.org/0000-0002-1035-9493
                Article
                19561
                10.1038/s41467-020-19561-8
                7666214
                33188177
                d966cea7-e787-407e-b332-3e337697b06e
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 20 May 2020
                : 13 October 2020
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100002301, Eesti Teadusagentuur (Estonian Research Council);
                Award ID: PUT1024
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100005416, Norges Forskningsråd (Research Council of Norway);
                Award ID: 262853
                Award ID: 268002
                Award Recipient :
                Categories
                Article
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                © The Author(s) 2020

                Uncategorized
                biocatalysis,oxidoreductases
                Uncategorized
                biocatalysis, oxidoreductases

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