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      The MD17 datasets from the perspective of datasets for gas-phase “small” molecule potentials

      1 , 2 , 3 , 1 , 4 , 5 , 6
      The Journal of Chemical Physics
      AIP Publishing

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          Abstract

          There has been great progress in developing methods for machine-learned potential energy surfaces. There have also been important assessments of these methods by comparing so-called learning curves on datasets of electronic energies and forces, notably the MD17 database. The dataset for each molecule in this database generally consists of tens of thousands of energies and forces obtained from DFT direct dynamics at 500 K. We contrast the datasets from this database for three “small” molecules, ethanol, malonaldehyde, and glycine, with datasets we have generated with specific targets for the potential energy surfaces (PESs) in mind: a rigorous calculation of the zero-point energy and wavefunction, the tunneling splitting in malonaldehyde, and, in the case of glycine, a description of all eight low-lying conformers. We found that the MD17 datasets are too limited for these targets. We also examine recent datasets for several PESs that describe small-molecule but complex chemical reactions. Finally, we introduce a new database, “QM-22,” which contains datasets of molecules ranging from 4 to 15 atoms that extend to high energies and a large span of configurations.

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          Is Open Access

          ANI-1: an extensible neural network potential with DFT accuracy at force field computational cost† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c6sc05720a Click here for additional data file.

          We demonstrate how a deep neural network (NN) trained on a data set of quantum mechanical (QM) DFT calculated energies can learn an accurate and transferable atomistic potential for organic molecules containing H, C, N, and O atoms.
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            The semiclassical way to molecular spectroscopy

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              Deep Potential Molecular Dynamics: A Scalable Model with the Accuracy of Quantum Mechanics

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                Author and article information

                Contributors
                Journal
                The Journal of Chemical Physics
                J. Chem. Phys.
                AIP Publishing
                0021-9606
                1089-7690
                June 28 2022
                June 28 2022
                : 156
                : 24
                : 240901
                Affiliations
                [1 ]Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
                [2 ]Independent Researcher, Toronto, Canada
                [3 ]Dipartimento di Chimica, Università Degli Studi di Milano, via Golgi 19, 20133 Milano, Italy
                [4 ]Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, USA
                [5 ]Department of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
                [6 ]Department of Chemistry, Yale University, New Haven, Connecticut 06520, USA
                Article
                10.1063/5.0089200
                35778068
                d74cce14-bccd-47bc-b802-eda85d63773c
                © 2022

                Free to read

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