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      In vivo genome editing in animals using AAV-CRISPR system: applications to translational research of human disease

      review-article
      a , 1 , b , 2 , 3 , 4 , 5
      F1000Research
      F1000 Research Limited
      CRISPR/Cas9 complex, genome editing, adeno-associated virus

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          Abstract

          Adeno-associated virus (AAV) has shown promising therapeutic efficacy with a good safety profile in a wide range of animal models and human clinical trials. With the advent of clustered regulatory interspaced short palindromic repeat (CRISPR)-based genome-editing technologies, AAV provides one of the most suitable viral vectors to package, deliver, and express CRISPR components for targeted gene editing. Recent discoveries of smaller Cas9 orthologues have enabled the packaging of Cas9 nuclease and its chimeric guide RNA into a single AAV delivery vehicle for robust in vivo genome editing. Here, we discuss how the combined use of small Cas9 orthologues, tissue-specific minimal promoters, AAV serotypes, and different routes of administration has advanced the development of efficient and precise in vivo genome editing and comprehensively review the various AAV-CRISPR systems that have been effectively used in animals. We then discuss the clinical implications and potential strategies to overcome off-target effects, immunogenicity, and toxicity associated with CRISPR components and AAV delivery vehicles. Finally, we discuss ongoing non-viral-based ex vivo gene therapy clinical trials to underscore the current challenges and future prospects of CRISPR/Cas9 delivery for human therapeutics.

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          Most cited references100

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          Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening

          This protocol from Feng Zhang's lab enables genome-scale knockout and transcriptional activation screening using the CRISPR-Cas9 system, as sgRNA libraries are constructed and packaged into lentiviral vectors for delivery into cells for screening.
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            CRISPR interference (CRISPRi) for sequence-specific control of gene expression.

            Sequence-specific control of gene expression on a genome-wide scale is an important approach for understanding gene functions and for engineering genetic regulatory systems. We have recently described an RNA-based method, CRISPR interference (CRISPRi), for targeted silencing of transcription in bacteria and human cells. The CRISPRi system is derived from the Streptococcus pyogenes CRISPR (clustered regularly interspaced palindromic repeats) pathway, requiring only the coexpression of a catalytically inactive Cas9 protein and a customizable single guide RNA (sgRNA). The Cas9-sgRNA complex binds to DNA elements complementary to the sgRNA and causes a steric block that halts transcript elongation by RNA polymerase, resulting in the repression of the target gene. Here we provide a protocol for the design, construction and expression of customized sgRNAs for transcriptional repression of any gene of interest. We also provide details for testing the repression activity of CRISPRi using quantitative fluorescence assays and native elongating transcript sequencing. CRISPRi provides a simplified approach for rapid gene repression within 1-2 weeks. The method can also be adapted for high-throughput interrogation of genome-wide gene functions and genetic interactions, thus providing a complementary approach to RNA interference, which can be used in a wider variety of organisms.
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              Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library.

              Identification of genes influencing a phenotype of interest is frequently achieved through genetic screening by RNA interference (RNAi) or knockouts. However, RNAi may only achieve partial depletion of gene activity, and knockout-based screens are difficult in diploid mammalian cells. Here we took advantage of the efficiency and high throughput of genome editing based on type II, clustered, regularly interspaced, short palindromic repeats (CRISPR)-CRISPR-associated (Cas) systems to introduce genome-wide targeted mutations in mouse embryonic stem cells (ESCs). We designed 87,897 guide RNAs (gRNAs) targeting 19,150 mouse protein-coding genes and used a lentiviral vector to express these gRNAs in ESCs that constitutively express Cas9. Screening the resulting ESC mutant libraries for resistance to either Clostridium septicum alpha-toxin or 6-thioguanine identified 27 known and 4 previously unknown genes implicated in these phenotypes. Our results demonstrate the potential for efficient loss-of-function screening using the CRISPR-Cas9 system.
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                Author and article information

                Journal
                F1000Res
                F1000Res
                F1000Research
                F1000Research
                F1000 Research Limited (London, UK )
                2046-1402
                20 December 2017
                2017
                : 6
                : 2153
                Affiliations
                [1 ]Department of Mechanical and Biomedical Engineering, City University of Hong Kong, Hong Kong, SAR, China
                [2 ]Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA
                [3 ]Department of Ophthalmology and Visual Sciences, Albert Einstein College of Medicine, Bronx, New York, USA
                [4 ]Department of Medicine, Albert Einstein College of Medicine, Bronx, New York, USA
                [5 ]Institute for Aging Research, Albert Einstein College of Medicine, Bronx, New York, USA
                Author notes

                No competing interests were disclosed.

                Author information
                https://orcid.org/0000-0002-4528-0363
                Article
                10.12688/f1000research.11243.1
                5749125
                29333255
                ca8a6459-c33c-4517-9cc1-796fa6074b45
                Copyright: © 2017 Lau CH and Suh Y

                This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 14 December 2017
                Funding
                Funded by: National Institutes of Health
                Award ID: AG017242
                Award ID: GM104459
                Award ID: CA180126
                This work was funded by National Institutes of Health grants AG017242, GM104459, and CA180126 (to Yousin Suh).
                Categories
                Review
                Articles
                Aging

                crispr/cas9 complex,genome editing,adeno-associated virus

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