0
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Discovery of α-Amidobenzylboronates as Highly Potent Covalent Inhibitors of Plasma Kallikrein

      rapid-communication

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Hereditary angioedema (HAE), a rare genetic disorder, is associated with uncontrolled plasma kallikrein (PKa) enzyme activity leading to the generation of bradykinin swelling in subcutaneous and submucosal membranes in various locations of the body. Herein, we describe a series of potent α-amidobenzylboronates as potential covalent inhibitors of PKa. These compounds exhibited time-dependent inhibition of PKa (compound 20 IC 50 66 nM at 1 min, 70 pM at 24 h). Further compound dissociation studies demonstrated that 20 showed no apparent reversibility comparable to d-Phe-Pro-Arg-chloromethylketone (PPACK) ( 23), a known nonselective covalent PKa inhibitor.

          Related collections

          Most cited references42

          • Record: found
          • Abstract: found
          • Article: not found

          Emerging and Re-Emerging Warheads for Targeted Covalent Inhibitors: Applications in Medicinal Chemistry and Chemical Biology

          Targeted covalent inhibitors (TCIs) are designed to bind poorly conserved amino acids by means of reactive groups, the so-called warheads. Currently, targeting noncatalytic cysteine residues with acrylamides and other α,β-unsaturated carbonyl compounds is the predominant strategy in TCI development. The recent ascent of covalent drugs has stimulated considerable efforts to characterize alternative warheads for the covalent-reversible and irreversible engagement of noncatalytic cysteine residues as well as other amino acids. This Perspective article provides an overview of warheads-beyond α,β-unsaturated amides-recently used in the design of targeted covalent ligands. Promising reactive groups that have not yet demonstrated their utility in TCI development are also highlighted. Special emphasis is placed on the discussion of reactivity and of case studies illustrating applications in medicinal chemistry and chemical biology.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            FRED and HYBRID docking performance on standardized datasets.

            The docking performance of the FRED and HYBRID programs are evaluated on two standardized datasets from the Docking and Scoring Symposium of the ACS Spring 2011 national meeting. The evaluation includes cognate docking and virtual screening performance. FRED docks 70 % of the structures to within 2 Å in the cognate docking test. In the virtual screening test, FRED is found to have a mean AUC of 0.75. The HYBRID program uses a modified version of FRED's algorithm that uses both ligand- and structure-based information to dock molecules, which increases its mean AUC to 0.78. HYBRID can also implicitly account for protein flexibility by making use of multiple crystal structures. Using multiple crystal structures improves HYBRID's performance (mean AUC 0.80) with a negligible increase in docking time (~15 %).
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              The catalytic triad of serine peptidases.

              L Polgár (2005)
              The catalytic action of serine peptidases depends on the interplay of a nucleophile, a general base and an acid. In the classic trypsin and subtilisin families this catalytic triad is composed of serine, histidine and aspartic acid residues and exhibits similar spatial arrangements, but the order of the residues in the amino acid sequence is different. By now several new families have been discovered, in which the nucleophile-base-acid pattern is generally conserved, but the individual components can vary. The variations illustrate how different groups and different protein structures achieve the same reaction.
                Bookmark

                Author and article information

                Journal
                ACS Med Chem Lett
                ACS Med Chem Lett
                ml
                amclct
                ACS Medicinal Chemistry Letters
                American Chemical Society
                1948-5875
                28 March 2024
                11 April 2024
                28 March 2024
                : 15
                : 4
                : 501-509
                Affiliations
                []Biodiscovery Institute, School of Pharmacy, University of Nottingham , Nottingham, NG7 2RD, United Kingdom
                []KalVista Pharmaceuticals Limited , Salisbury, SP4 0BF, United Kingdom
                Author notes
                Author information
                https://orcid.org/0000-0002-4305-5461
                https://orcid.org/0000-0003-3046-137X
                Article
                10.1021/acsmedchemlett.3c00572
                11017388
                38628785
                bcb9d308-41e7-42aa-8afc-2a8a45f196ec
                © 2024 The Authors. Published by American Chemical Society

                Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained ( https://creativecommons.org/licenses/by/4.0/).

                History
                : 21 December 2023
                : 26 March 2024
                : 25 March 2024
                Funding
                Funded by: Engineering and Physical Sciences Research Council, doi 10.13039/501100000266;
                Award ID: EP/R513283/1
                Categories
                Letter
                Custom metadata
                ml3c00572
                ml3c00572

                Pharmaceutical chemistry
                plasma kallikrein,serine protease,covalent inhibitor,boronates
                Pharmaceutical chemistry
                plasma kallikrein, serine protease, covalent inhibitor, boronates

                Comments

                Comment on this article