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      TIGIT Marks Exhausted T Cells, Correlates with Disease Progression, and Serves as a Target for Immune Restoration in HIV and SIV Infection

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          Abstract

          HIV infection induces phenotypic and functional changes to CD8 + T cells defined by the coordinated upregulation of a series of negative checkpoint receptors that eventually result in T cell exhaustion and failure to control viral replication. We report that effector CD8 + T cells during HIV infection in blood and SIV infection in lymphoid tissue exhibit higher levels of the negative checkpoint receptor TIGIT. Increased frequencies of TIGIT + and TIGIT + PD-1 + CD8 + T cells correlated with parameters of HIV and SIV disease progression. TIGIT remained elevated despite viral suppression in those with either pharmacological antiretroviral control or immunologically in elite controllers. HIV and SIV-specific CD8 + T cells were dysfunctional and expressed high levels of TIGIT and PD-1. Ex-vivo single or combinational antibody blockade of TIGIT and/or PD-L1 restored viral-specific CD8 + T cell effector responses. The frequency of TIGIT + CD4 + T cells correlated with the CD4 + T cell total HIV DNA. These findings identify TIGIT as a novel marker of dysfunctional HIV-specific T cells and suggest TIGIT along with other checkpoint receptors may be novel curative HIV targets to reverse T cell exhaustion.

          Author Summary

          HIV-1 infection contributes substantially to global morbidity and mortality, with no immediate promise of an effective vaccine. One major obstacle to vaccine development and therapy is to understand why HIV-1 replication persists in a person despite the presence of viral specific immune responses. The emerging consensus has been that these immune cells are functionally ‘exhausted’ or anergic, and thus, although they can recognize HIV-1 specific target cells, they are unable to effectively keep up with rapid and dynamic viral replication in an individual. We have identified a novel combination pathway that can be targeted, TIGIT and PD-L1which may be responsible, at least in part, for making these immune cells dysfunctional and exhausted and thus unable to control the virus. We show that by blocking the TIGIT and PD-L1 pathway, we can reverse the defects of these viral specific immune cells. Our findings will give new directions to vaccines and therapies that will potentially reverse these dysfunctional cells and allow them to control HIV-1 replication, but also serve in “Shock and Kill” HIV curative strategies.

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          Most cited references31

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          Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing.

          Human tumours typically harbour a remarkable number of somatic mutations. If presented on major histocompatibility complex class I molecules (MHCI), peptides containing these mutations could potentially be immunogenic as they should be recognized as 'non-self' neo-antigens by the adaptive immune system. Recent work has confirmed that mutant peptides can serve as T-cell epitopes. However, few mutant epitopes have been described because their discovery required the laborious screening of patient tumour-infiltrating lymphocytes for their ability to recognize antigen libraries constructed following tumour exome sequencing. We sought to simplify the discovery of immunogenic mutant peptides by characterizing their general properties. We developed an approach that combines whole-exome and transcriptome sequencing analysis with mass spectrometry to identify neo-epitopes in two widely used murine tumour models. Of the >1,300 amino acid changes identified, ∼13% were predicted to bind MHCI, a small fraction of which were confirmed by mass spectrometry. The peptides were then structurally modelled bound to MHCI. Mutations that were solvent-exposed and therefore accessible to T-cell antigen receptors were predicted to be immunogenic. Vaccination of mice confirmed the approach, with each predicted immunogenic peptide yielding therapeutically active T-cell responses. The predictions also enabled the generation of peptide-MHCI dextramers that could be used to monitor the kinetics and distribution of the anti-tumour T-cell response before and after vaccination. These findings indicate that a suitable prediction algorithm may provide an approach for the pharmacodynamic monitoring of T-cell responses as well as for the development of personalized vaccines in cancer patients.
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            Stimulation of HIV-1-specific cytolytic T lymphocytes facilitates elimination of latent viral reservoir after virus reactivation.

            Highly active antiretroviral therapy (HAART) suppresses HIV-1 replication but cannot eliminate the virus because HIV-1 establishes latent infection. Interruption of HAART leads to a rapid rebound of viremia, so life-long treatment is required. Efforts to purge the latent reservoir have focused on reactivating latent proviruses without inducing global T cell activation. However, the killing of the infected cells after virus reactivation, which is essential for elimination of the reservoir, has not been assessed. Here we show that after reversal of latency in an in vitro model, infected resting CD4(+) T cells survived despite viral cytopathic effects, even in the presence of autologous cytolytic T lymphocytes (CTLs) from most patients on HAART. Antigen-specific stimulation of patient CTLs led to efficient killing of infected cells. These results demonstrate that stimulating HIV-1-specific CTLs prior to reactivating latent HIV-1 may be essential for successful eradication efforts and should be considered in future clinical trials. Copyright © 2012 Elsevier Inc. All rights reserved.
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              HIV: Shock and kill.

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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Pathog
                PLoS Pathog
                plos
                plospath
                PLoS Pathogens
                Public Library of Science (San Francisco, CA USA )
                1553-7366
                1553-7374
                7 January 2016
                January 2016
                : 12
                : 1
                : e1005349
                Affiliations
                [1 ]Hawaii Center for HIV/AIDS, Department of Tropical Medicine, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii, United States of America
                [2 ]Department of Microbiology and Immunology, Tohoku University Graduate School of Medicine, Sendai, Japan
                [3 ]Vaccine and Gene Therapy Institute, Oregon Health and Science University, Portland, Oregon, United States of America
                [4 ]Oregon National Primate Research Center, Oregon Health and Science University, Portland, Oregon, United States of America
                [5 ]Department of Immunology, University of Toronto, Toronto, Ontario, Canada
                [6 ]Division of Experimental Medicine, Department of Medicine, San Francisco General Hospital, University of California, San Francisco, San Francisco, California, United States of America
                [7 ]HIV/AIDS Division, Department of Medicine, San Francisco General Hospital, University of California, San Francisco, San Francisco, California, United States of America
                [8 ]Biologics Discovery California, Bristol-Myers Squibb, Redwood City, California, United States of America
                Emory University, UNITED STATES
                Author notes

                I hereby declare that MM (Scientist, Immuno-Oncology) and AJK (Vice president, Immuno-Oncology) are employed by Bristol-Myers Squibb, and have no significant competing financial, professional or personal interests that might have influenced the performance or presentation of the work described in this manuscript. This does not alter our adherence to all PLOS Pathogens policies on sharing data and materials.

                Conceived and designed the experiments: GMC LCN JBS. Performed the experiments: GMC GMW TF BJB JSR HLW KBH BIM LCN JBS. Analyzed the data: GMC CMS KLC MO NI TL FMH MAM SGH MM AJK SGD JBS. Contributed reagents/materials/analysis tools: GMW BJB MM AJK KLC TF MAM. Wrote the paper: GMC CMS KLC MO NI TL FMH MAM SGH MM AJK SGD JBS LCN.

                ‡ JBS and LCN share equal co-senior authorship.

                Article
                PPATHOGENS-D-15-01706
                10.1371/journal.ppat.1005349
                4704737
                26741490
                b4439585-2c9c-4d0b-9d13-aea7d301ffab
                © 2016 Chew et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

                History
                : 21 July 2015
                : 30 November 2015
                Page count
                Figures: 7, Tables: 2, Pages: 28
                Funding
                The project described was supported in part by several funding agencies: The SCOPE cohort was supported in part by the National Institutes of Allergies and Infectious Diseases (NIAID) (RO1 AI087145, K24 AI069994), the UCSF Clinical and Translational Research Institute Clinical Research Center (UL1 RR024131), and the CFAR Network of Integrated Systems (R24 AI067039). This work was supported in part by the National Center for Research Resources (NCCR) grant P51 OD011092 and the NIAID grant P30 AI027763. This Funding was also made possible by collaborative efforts of the Office of AIDS Research, the NIAID, and the International AIDS Society (LCN). Additional support was provided in part with federal funds from the NIAID and NIH contract Number NOI-AI-85341. The contents of this publication are solely the responsibility of the authors and do not necessarily represent the official views of the NIH. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Custom metadata
                Data is available on GenBank: accession KR534505, http://www.ncbi.nlm.nih.gov/nuccore/KR534505.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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