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      HIV-1-mediated insertional activation of STAT5B and BACH2 trigger viral reservoir in T regulatory cells

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          Abstract

          HIV-1 insertions targeting BACH2 or MLK2 are enriched and persist for decades in hematopoietic cells from patients under combination antiretroviral therapy. However, it is unclear how these insertions provide such selective advantage to infected cell clones. Here, we show that in 30/87 (34%) patients under combination antiretroviral therapy, BACH2, and STAT5B are activated by insertions triggering the formation of mRNAs that contain viral sequences fused by splicing to their first protein-coding exon. These chimeric mRNAs, predicted to express full-length proteins, are enriched in T regulatory and T central memory cells, but not in other T lymphocyte subsets or monocytes. Overexpression of BACH2 or STAT5B in primary T regulatory cells increases their proliferation and survival without compromising their function. Hence, we provide evidence that HIV-1-mediated insertional activation of BACH2 and STAT5B favor the persistence of a viral reservoir in T regulatory cells in patients under combination antiretroviral therapy.

          Abstract

          HIV insertions in hematopoietic cells are enriched in BACH2 or MLK2 genes, but the selective advantages conferred are unknown. Here, the authors show that BACH2 and additionally STAT5B are activated by viral insertions, generating chimeric mRNAs specifically enriched in T regulatory cells favoring their persistence.

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          Most cited references36

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          Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse.

          Retroviruses, acting as somatic cell insertional mutagens, have been widely used to identify cancer genes in the haematopoietic system and mammary gland. An insertional mutagen for use in other mouse somatic cells would facilitate the identification of genes involved in tumour formation in a wider variety of tissues. Here we report the ability of the Sleeping Beauty transposon to act as a somatic insertional mutagen to identify genes involved in solid tumour formation. A Sleeping Beauty transposon, engineered to elicit loss-of-function or gain-of-function mutations, transposed in all somatic tissues tested and accelerated tumour formation in mice predisposed to cancer. Cloning transposon insertion sites from these tumours revealed the presence of common integration sites, at known and candidate cancer genes, similar to those observed in retroviral mutagenesis screens. Sleeping Beauty is a new tool for unbiased, forward genetic screens for cancer genes in vivo.
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            Discovery of somatic STAT5b mutations in large granular lymphocytic leukemia.

            Large granular lymphocytic (LGL) leukemia is characterized by clonal expansion of cytotoxic T cells or natural killer cells. Recently, somatic mutations in the signal transducer and activator of transcription 3 (STAT3) gene were discovered in 28% to 40% of LGL leukemia patients. By exome and transcriptome sequencing of 2 STAT3 mutation-negative LGL leukemia patients, we identified a recurrent, somatic missense mutation (Y665F) in the Src-like homology 2 domain of the STAT5b gene. Targeted amplicon sequencing of 211 LGL leukemia patients revealed 2 additional patients with STAT5b mutations (N642H), resulting in a total frequency of 2% (4 of 211) of STAT5b mutations across all patients. The Y665F and N642H mutant constructs increased the transcriptional activity of STAT5 and tyrosine (Y694) phosphorylation, which was also observed in patient samples. The clinical course of the disease in patients with the N642H mutation was aggressive and fatal, clearly different from typical LGL leukemia with a relatively favorable outcome. This is the first time somatic STAT5 mutations are discovered in human cancer and further emphasizes the role of STAT family genes in the pathogenesis of LGL leukemia.
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              Uncovering and dissecting the genotoxicity of self-inactivating lentiviral vectors in vivo.

              Self-inactivating (SIN) lentiviral vectors (LV) have an excellent therapeutic potential as demonstrated in preclinical studies and clinical trials. However, weaker mechanisms of insertional mutagenesis could still pose a significant risk in clinical applications. Taking advantage of novel in vivo genotoxicity assays, we tested a battery of LV constructs, including some with clinically relevant designs, and found that oncogene activation by promoter insertion is the most powerful mechanism of early vector-induced oncogenesis. SIN LVs disabled in their capacity to activate oncogenes by promoter insertion were less genotoxic and induced tumors by enhancer-mediated activation of oncogenes with efficiency that was proportional to the strength of the promoter used. On the other hand, when enhancer activity was reduced by using moderate promoters, oncogenesis by inactivation of tumor suppressor gene was revealed. This mechanism becomes predominant when the enhancer activity of the internal promoter is shielded by the presence of a synthetic chromatin insulator cassette. Our data provide both mechanistic insights and quantitative readouts of vector-mediated genotoxicity, allowing a relative ranking of different vectors according to these features, and inform current and future choices of vector design with increasing biosafety.
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                Author and article information

                Contributors
                cesana.daniela@hsr.it
                montini.eugenio@hsr.it
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                8 September 2017
                8 September 2017
                2017
                : 8
                : 498
                Affiliations
                [1 ]ISNI 0000000417581884, GRID grid.18887.3e, San Raffaele Telethon Institute for Gene Therapy (SR-Tiget), , IRCCS, San Raffaele Scientific Institute, ; Milan, 20132 Italy
                [2 ]ISNI 0000 0001 2174 1754, GRID grid.7563.7, Department of Informatics, Systems and Communication, , University of Milano—Bicocca, ; Viale Sarca 336, Milan, 20126 Italy
                [3 ]ISNI 0000 0004 1756 2536, GRID grid.429135.8, National Research Council, , Institute for Biomedical Technologies, ; Via Fratelli Cervi 93, Segrate, 20090 Italy
                [4 ]ISNI 0000000417581884, GRID grid.18887.3e, Department of Infectious Diseases, , IRCCS, San Raffaele Scientific Institute, ; Milan, 20132 Italy
                [5 ]ISNI 0000000417581884, GRID grid.18887.3e, Viral Pathogens and Biosafety Unit, Division of Immunology, Transplantation and Infectious Diseases, , IRCCS, San Raffaele Scientific Institute, ; Milan, 20132 Italy
                [6 ]ISNI 0000000417581884, GRID grid.18887.3e, AIDS Immunopathogenesis Unit, Division of Immunology, Transplantation and Infectious Diseases, , IRCCS, San Raffaele Scientific Institute, ; Milan, 20132 Italy
                [7 ]GRID grid.15496.3f, Vita-Salute San Raffaele University School of Medicine, ; Milan, 20132 Italy
                Article
                609
                10.1038/s41467-017-00609-1
                5591266
                28887441
                afe913e0-2664-45f2-8989-12140964ecae
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 8 August 2016
                : 12 July 2017
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