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      Oxidative stress and senescence in social insects: a significant but inconsistent link?

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          Abstract

          The life-prolonging effects of antioxidants have long entered popular culture, but the scientific community still debates whether free radicals and the resulting oxidative stress negatively affect longevity. Social insects are intriguing models for analysing the relationship between oxidative stress and senescence because life histories differ vastly between long-lived reproductives and the genetically similar but short-lived workers. Here, we present the results of an experiment on the accumulation of oxidative damage to proteins, and a comparative analysis of the expression of 20 selected genes commonly involved in managing oxidative damage, across four species of social insects: a termite, two bees and an ant. Although the source of analysed tissue varied across the four species, our results suggest that oxidative stress is a significant factor in senescence and that its manifestation and antioxidant defenses differ among species, making it difficult to find general patterns. More detailed and controlled investigations on why responses to oxidative stress may differ across social species may lead to a better understanding of the relations between oxidative stress, antioxidants, social life history and senescence.

          This article is part of the theme issue ‘Ageing and sociality: why, when and how does sociality change ageing patterns?'

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          Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

          In comparative high-throughput sequencing assays, a fundamental task is the analysis of count data, such as read counts per gene in RNA-seq, for evidence of systematic changes across experimental conditions. Small replicate numbers, discreteness, large dynamic range and the presence of outliers require a suitable statistical approach. We present DESeq2, a method for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates. This enables a more quantitative analysis focused on the strength rather than the mere presence of differential expression. The DESeq2 package is available at http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html. Electronic supplementary material The online version of this article (doi:10.1186/s13059-014-0550-8) contains supplementary material, which is available to authorized users.
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            Basic local alignment search tool.

            A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score. Recent mathematical results on the stochastic properties of MSP scores allow an analysis of the performance of this method as well as the statistical significance of alignments it generates. The basic algorithm is simple and robust; it can be implemented in a number of ways and applied in a variety of contexts including straightforward DNA and protein sequence database searches, motif searches, gene identification searches, and in the analysis of multiple regions of similarity in long DNA sequences. In addition to its flexibility and tractability to mathematical analysis, BLAST is an order of magnitude faster than existing sequence comparison tools of comparable sensitivity.
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              A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

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                Author and article information

                Contributors
                Journal
                Philos Trans R Soc Lond B Biol Sci
                Philos Trans R Soc Lond B Biol Sci
                RSTB
                royptb
                Philosophical Transactions of the Royal Society B: Biological Sciences
                The Royal Society
                0962-8436
                1471-2970
                April 26, 2021
                March 8, 2021
                March 8, 2021
                : 376
                : 1823 , Theme issue ‘Ageing and sociality: why, when and how does sociality change ageing patterns?’ compiled and edited by Judith Korb and Jürgen Heinze
                : 20190732
                Affiliations
                [ 1 ]Faculty of Science and Engineering, Theoretical Research in Evolutionary Life Sciences, RUG, , 9747 AG Groningen, The Netherlands
                [ 2 ]Department of Evolutionary Biology and Ecology, Institute of Biology I (Zoology), University of Freiburg, , Hauptstraße 1, 79104 Freiburg (Brsg.), Germany
                [ 3 ]Institute for Biology - Molecular Ecology, Martin-Luther-University Halle-Saale, , Hoher Weg 4, 06099 Halle, Germany
                [ 4 ]Zoology, Department of Evolutionary Biology, University of Regensburg, , Universitätsstraße 31, 93053 Regensburg, Germany
                [ 5 ]Institute of Organismic and Molecular Evolution (IOME), Johannes Gutenberg University Mainz, , Hanns-Dieter-Hüsch-Weg 15, 55128 Mainz, Germany
                [ 6 ]Institute for Biology - General Zoology, Martin Luther University Halle-Wittenberg, , Hoher Weg 8, 06120 Halle, Germany
                Author notes
                [†]

                Present address: Department of Zoology and Entomology, University of Pretoria, Private Bag X20, 0028 Hatfield, Pretoria, South Africa.

                Electronic supplementary material is available online at https://doi.org/10.6084/m9.figshare.c.5280338.

                Author information
                http://orcid.org/0000-0002-2775-1918
                http://orcid.org/0000-0002-0494-1428
                http://orcid.org/0000-0003-2299-7000
                http://orcid.org/0000-0002-9403-5946
                http://orcid.org/0000-0001-9577-9376
                http://orcid.org/0000-0003-4397-000X
                http://orcid.org/0000-0002-7590-4851
                http://orcid.org/0000-0003-2517-1351
                http://orcid.org/0000-0001-5159-5815
                http://orcid.org/0000-0001-5600-587X
                Article
                rstb20190732
                10.1098/rstb.2019.0732
                7938172
                33678022
                afe50f4b-6f1e-477c-9612-bb9c82b3bc54
                © 2021 The Authors.

                Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.

                History
                : December 14, 2020
                Funding
                Funded by: Deutsche Forschungsgemeinschaft, http://dx.doi.org/10.13039/501100001659;
                Award ID: FOR 2281
                Categories
                1001
                70
                197
                Articles
                Research Articles
                Custom metadata
                April 26, 2021

                Philosophy of science
                social insects,ageing,longevity,protein oxidation,antioxidant genes,transcriptomes

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