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      Macroscopic models for networks of coupled biological oscillators

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          Abstract

          We describe a low-dimensional relation and demonstrate its use in reducing model complexity for coupled oscillator systems.

          Abstract

          The study of synchronization of coupled biological oscillators is fundamental to many areas of biology including neuroscience, cardiac dynamics, and circadian rhythms. Mathematical models of these systems may involve hundreds of variables in thousands of individual cells resulting in an extremely high-dimensional description of the system. This often contrasts with the low-dimensional dynamics exhibited on the collective or macroscopic scale for these systems. We introduce a macroscopic reduction for networks of coupled oscillators motivated by an elegant structure we find in experimental measurements of circadian protein expression and several mathematical models for coupled biological oscillators. The observed structure in the collective amplitude of the oscillator population differs from the well-known Ott-Antonsen ansatz, but its emergence can be characterized through a simple argument depending only on general phase-locking behavior in coupled oscillator systems. We further demonstrate its emergence in networks of noisy heterogeneous oscillators with complex network connectivity. Applying this structure, we derive low-dimensional macroscopic models for oscillator population activity. This approach allows for the incorporation of cellular-level experimental data into the macroscopic model whose parameters and variables can then be directly associated with tissue- or organism-level properties, thereby elucidating the core properties driving the collective behavior of the system.

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          Emergence of scaling in random networks

          Systems as diverse as genetic networks or the world wide web are best described as networks with complex topology. A common property of many large networks is that the vertex connectivities follow a scale-free power-law distribution. This feature is found to be a consequence of the two generic mechanisms that networks expand continuously by the addition of new vertices, and new vertices attach preferentially to already well connected sites. A model based on these two ingredients reproduces the observed stationary scale-free distributions, indicating that the development of large networks is governed by robust self-organizing phenomena that go beyond the particulars of the individual systems.
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            From Kuramoto to Crawford: exploring the onset of synchronization in populations of coupled oscillators

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              On the implementation of an interior-point filter line-search algorithm for large-scale nonlinear programming

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                Author and article information

                Journal
                Sci Adv
                Sci Adv
                SciAdv
                advances
                Science Advances
                American Association for the Advancement of Science
                2375-2548
                August 2018
                03 August 2018
                : 4
                : 8
                : e1701047
                Affiliations
                [1 ]Department of Mathematics, Schreiner University, Kerrville, TX 78028, USA.
                [2 ]Department of Mathematics, University of Michigan, Ann Arbor, MI 48109, USA.
                [3 ]Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.
                [4 ]Department of Anesthesiology, University of Michigan, Ann Arbor, MI 48109, USA.
                Author notes
                [* ]Corresponding author. Email: khannay@ 123456schreiner.edu
                Author information
                http://orcid.org/0000-0003-0193-0245
                Article
                1701047
                10.1126/sciadv.1701047
                6070363
                30083596
                af0a3192-47e8-459f-bf9c-7a8bf3a7aa97
                Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).

                This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license, which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.

                History
                : 04 April 2017
                : 20 June 2018
                Funding
                Funded by: doi http://dx.doi.org/10.13039/100000001, National Science Foundation;
                Award ID: DMS-1412119
                Funded by: doi http://dx.doi.org/10.13039/100004412, Human Frontier Science Program;
                Award ID: RPG 24/2012
                Categories
                Research Article
                Research Articles
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                Mathematics
                Mathematics
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