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      Establishment and application of a loop‐mediated isothermal amplification−lateral flow dipstick (LAMP–LFD) method for detecting Clostridium piliforme

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          Abstract

          Background

          Clostridium piliforme (causative agent of Tyzzer disease) infects various animals, including primates, and hence a threat to animal and human health worldwide. At present, it is detected using traditional methods, such as path morphology, polymerase chain reaction and enzyme‐linked immunosorbent assay. Therefore, it is necessary to develop convenient, efficient visual molecular biological methods for detecting C. piliforme.

          Objectives

          To establish a method with good specificity, high sensitivity and simple operation for the detection of C. piliforme.

          Methods

          In this study, we designed internal and external primers based on the conserved 23S rRNA region of C. piliforme to develop a biotin‐labelled diarrhoea‐suffered loop‐mediated isothermal amplification (LAMP) system for detecting of C. piliforme and assessed the specificity, sensitivity and repeatability of the LAMP system.

          Results

          The LAMP system did not exhibit cross‐reactivity with 24 other common pathogenic species, indicating that it had good specificity. The minimum concentration of sensitivity was 1 × 10 −7 ng/μL. Mouse models ( Meriones unguiculatus) of Tyzzer disease were established and a LAMP−lateral flow dipstick (LAMP–LFD) was developed for detecting C. piliforme. The detection rate of C. piliforme was 5.08% in clean‐grade animals and 9.96% in specific‐pathogen‐free‐grade animals from Jiangsu, Zhejiang and Shanghai. In addition, the detection rates of C. piliforme were 10.1%, 8.6% and 20%, in animals from Hangzhou, Wenzhou and Shaoxing, respectively. The detection rate of C. piliforme was higher in experimental animals used in schools than in those used in companies and research institutes.

          Conclusions

          The LAMP–LFD method established in this study can be used to detect C. piliforme in animals handled in laboratory facilities of universities, pharmaceutical enterprises and research and development institutions.

          Abstract

          In this study, we developed a method for the rapid detection of Clostridium piliforme. This method has good specificity, high sensitivity, simple operation and potential for basic promotion application.

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          Most cited references38

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          Loop-mediated isothermal amplification of DNA.

          T. Notomi (2000)
          We have developed a novel method, termed loop-mediated isothermal amplification (LAMP), that amplifies DNA with high specificity, efficiency and rapidity under isothermal conditions. This method employs a DNA polymerase and a set of four specially designed primers that recognize a total of six distinct sequences on the target DNA. An inner primer containing sequences of the sense and antisense strands of the target DNA initiates LAMP. The following strand displacement DNA synthesis primed by an outer primer releases a single-stranded DNA. This serves as template for DNA synthesis primed by the second inner and outer primers that hybridize to the other end of the target, which produces a stem-loop DNA structure. In subsequent LAMP cycling one inner primer hybridizes to the loop on the product and initiates displacement DNA synthesis, yielding the original stem-loop DNA and a new stem-loop DNA with a stem twice as long. The cycling reaction continues with accumulation of 10(9) copies of target in less than an hour. The final products are stem-loop DNAs with several inverted repeats of the target and cauliflower-like structures with multiple loops formed by annealing between alternately inverted repeats of the target in the same strand. Because LAMP recognizes the target by six distinct sequences initially and by four distinct sequences afterwards, it is expected to amplify the target sequence with high selectivity.
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            Real-time kinetics and high-resolution melt curves in single-molecule digital LAMP to differentiate and study specific and non-specific amplification

            Abstract Isothermal amplification assays, such as loop-mediated isothermal amplification (LAMP), show great utility for the development of rapid diagnostics for infectious diseases because they have high sensitivity, pathogen-specificity and potential for implementation at the point of care. However, elimination of non-specific amplification remains a key challenge for the optimization of LAMP assays. Here, using chlamydia DNA as a clinically relevant target and high-throughput sequencing as an analytical tool, we investigate a potential mechanism of non-specific amplification. We then develop a real-time digital LAMP (dLAMP) with high-resolution melting temperature (HRM) analysis and use this single-molecule approach to analyze approximately 1.2 million amplification events. We show that single-molecule HRM provides insight into specific and non-specific amplification in LAMP that are difficult to deduce from bulk measurements. We use real-time dLAMP with HRM to evaluate differences between polymerase enzymes, the impact of assay parameters (e.g. time, rate or florescence intensity), and the effect background human DNA. By differentiating true and false positives, HRM enables determination of the optimal assay and analysis parameters that leads to the lowest limit of detection (LOD) in a digital isothermal amplification assay.
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              Recent advances in loop-mediated isothermal amplification (LAMP) for rapid and efficient detection of pathogens

              Highlights • Significance of LAMP method in rapid disease diagnosis is highlighted. • Different detection methods for amplicon visualization are explained. • Advancements in LAMP technique for disease identification are summarized. • Trends in development of LAMP disease diagnosis are discussed.
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                Author and article information

                Contributors
                hanwei3612@163.com
                fangweidai@163.com
                Journal
                Vet Med Sci
                Vet Med Sci
                10.1002/(ISSN)2053-1095
                VMS3
                Veterinary Medicine and Science
                John Wiley and Sons Inc. (Hoboken )
                2053-1095
                03 November 2023
                January 2024
                : 10
                : 1 ( doiID: 10.1002/vms3.v10.1 )
                : e1318
                Affiliations
                [ 1 ] Center of Laboratory Animal Hangzhou Medical College Hangzhou China
                [ 2 ] Zhejiang Provincial Key Laboratory of Laboratory Animals and Safety Research Hangzhou Medical College Hangzhou China
                [ 3 ] Engineering Research Center of Novel Vaccine of Zhejiang Province Hangzhou Medical College Hangzhou China
                Author notes
                [*] [* ] Correspondence

                Wei Han and Fangwei Dai, Center of Laboratory Animal, Hangzhou Medical College, Hangzhou, China; Zhejiang Provincial Key Laboratory of Laboratory Animals and Safety Research, Hangzhou Medical College, Hangzhou, China; Engineering Research Center of Novel Vaccine of Zhejiang Province, Hangzhou, China.

                Email: hanwei3612@ 123456163.com and fangweidai@ 123456163.com

                Author information
                https://orcid.org/0009-0007-3976-0188
                Article
                VMS31318
                10.1002/vms3.1318
                10949940
                37922247
                a9bad330-2cd7-4953-89a9-d5e736dda84c
                © 2023 The Authors. Veterinary Medicine and Science published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 21 September 2023
                : 14 July 2023
                : 20 October 2023
                Page count
                Figures: 6, Tables: 5, Pages: 12, Words: 6700
                Funding
                Funded by: Medical Science and Technology Project of Zhejiang Province , doi 10.13039/501100017594;
                Award ID: 2018KY351
                Award ID: 2020KY530
                Funded by: Public Welfare Technology Application Research Project of Zhejiang Province , doi 10.13039/501100010248;
                Award ID: LQY18C040001
                Award ID: 2017C3712
                Funded by: Hangzhou Medical College Institute Special Project
                Award ID: YS2021009
                Funded by: Department of Education of Zhejiang Province , doi 10.13039/501100008867;
                Award ID: Y201942573
                Funded by: Zhejiang Traditional Chinese Medicine Science Administration
                Award ID: 2021ZB081
                Categories
                Original Article
                RODENTS
                Original Articles
                Custom metadata
                2.0
                January 2024
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.3.9 mode:remove_FC converted:19.03.2024

                clostridium piliforme,diagnosis,lamp–lfd,rapid detection,tyzzer

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