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      Contribution of Heterotrophic Diazotrophs to N 2 Fixation in a Eutrophic River: Free-Living vs. Aggregate-Associated

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          Abstract

          Recent studies have indicated that heterotrophic diazotrophs are highly diverse and fix N 2 in aquatic environments with potentially adverse conditions for diazotrophy, such as oxic and rich in total nitrogen. In this study, we compared the activity and diversity of heterotrophic diazotrophs associated with aggregates (>12 μm) to free-living cells in the eutrophic Qishon River during the winter and summer seasons. Overall, measured heterotrophic N 2 fixation rates in the Qishon River ranged between 2.6–3.5 nmol N L –1 d –1. Heterotrophic N 2 fixation was mainly associated with aggregates in the summer samples (74 ± 24%), whereas during the winter the bulk diazotrophic activity was mostly ascribed to the free-living fraction (90 ± 6%). In addition, immunolabeled micrographs indicated the presence of aggregate-associated heterotrophic diazotrophs in both seasons, while phototrophic diazotrophs were also captured during the winter. The richness of free-living and aggregate-associated heterotrophic diazotrophs were overall similar, yet the evenness of the later was significantly smaller, suggesting that few of the species gained advantage from particle lifestyle. The differences in the activity, micro-localization and diversity of the diazotrophic community were mostly attributed to spatiotemporal changes in the ambient C: N ratios (total organic carbon, TOC: total nitrogen) and the TOC concentrations. Taken together, our results shed new light on the contribution of heterotrophic diazotroph associated with aggregates to total heterotrophic N 2 fixation in oxic, highly eutrophic aquatic environments.

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          DADA2: High resolution sample inference from Illumina amplicon data

          We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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            Cutadapt removes adapter sequences from high-throughput sequencing reads

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              An Earth-system perspective of the global nitrogen cycle.

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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                14 February 2022
                2022
                : 13
                : 779820
                Affiliations
                [1] 1Zuckerberg Institute for Water Research, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev , Sde Boker, Israel
                [2] 2Israel Oceanographic and Limnological Research, National Institute of Oceanography , Haifa, Israel
                Author notes

                Edited by: Sophie Rabouille, UMR 7621 Laboratoire d’Océanographie Microbienne, France

                Reviewed by: Matthew McGinness Mills, Stanford University, United States; Malin Olofsson, Swedish University of Agricultural Sciences, Sweden

                *Correspondence: Eyal Rahav, eyalrahav@ 123456ocean.org.il

                This article was submitted to Aquatic Microbiology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2022.779820
                8882987
                35237246
                a3693fe7-cfb6-43ab-84f5-b311f3f3e1fd
                Copyright © 2022 Geisler, Rahav and Bar-Zeev.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 19 September 2021
                : 19 January 2022
                Page count
                Figures: 7, Tables: 2, Equations: 0, References: 90, Pages: 14, Words: 9300
                Funding
                Funded by: Israel Science Foundation, doi 10.13039/501100003977;
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                diazotrophs,heterotrophic n2 fixation,aggregates,free-living cells,eutrophic river

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