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      Heteronuclear transverse and longitudinal relaxation in AX 4 spin systems: Application to 15N relaxations in 15NH 4 +

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      Journal of Magnetic Resonance
      Elsevier
      AX4 spin systems, Nuclear spin relaxation, Ammonium

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          Abstract

          Highlights

          • Group theory is used to simplify the calculations of nuclear spin relaxation rates.

          • Transverse and longitudinal 15N nuclear relaxation rates in 15NH 4 + are derived.

          • An ammonium ion bound to a protein domain rotates rapidly within its binding site.

          Abstract

          The equations that describe the time-evolution of transverse and longitudinal 15N magnetisations in tetrahedral ammonium ions, 15NH 4 +, are derived from the Bloch-Wangsness-Redfield density operator relaxation theory. It is assumed that the relaxation of the spin-states is dominated by (1) the intra-molecular 15N– 1H and 1H– 1H dipole–dipole interactions and (2) interactions of the ammonium protons with remote spins, which also include the contribution to the relaxations that arise from the exchange of the ammonium protons with the bulk solvent. The dipole–dipole cross-correlated relaxation mechanisms between each of the 15N– 1H and 1H– 1H interactions are explicitly taken into account in the derivations. An application to 15N-ammonium bound to a 41 kDa domain of the protein DnaK is presented, where a comparison between experiments and simulations show that the ammonium ion rotates rapidly within its binding site with a local correlation time shorter than approximately 1 ns. The theoretical framework provided here forms the basis for further investigations of dynamics of AX 4 spin systems, with ammonium ions in solution and bound to proteins of particular interest.

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          Most cited references41

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          Reaction Rates by Nuclear Magnetic Resonance

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            Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

            Fast transverse relaxation of 1H, 15N, and 13C by dipole-dipole coupling (DD) and chemical shift anisotropy (CSA) modulated by rotational molecular motions has a dominant impact on the size limit for biomacromolecular structures that can be studied by NMR spectroscopy in solution. Transverse relaxation-optimized spectroscopy (TROSY) is an approach for suppression of transverse relaxation in multidimensional NMR experiments, which is based on constructive use of interference between DD coupling and CSA. For example, a TROSY-type two-dimensional 1H,15N-correlation experiment with a uniformly 15N-labeled protein in a DNA complex of molecular mass 17 kDa at a 1H frequency of 750 MHz showed that 15N relaxation during 15N chemical shift evolution and 1HN relaxation during signal acquisition both are significantly reduced by mutual compensation of the DD and CSA interactions. The reduction of the linewidths when compared with a conventional two-dimensional 1H,15N-correlation experiment was 60% and 40%, respectively, and the residual linewidths were 5 Hz for 15N and 15 Hz for 1HN at 4 degrees C. Because the ratio of the DD and CSA relaxation rates is nearly independent of the molecular size, a similar percentagewise reduction of the overall transverse relaxation rates is expected for larger proteins. For a 15N-labeled protein of 150 kDa at 750 MHz and 20 degrees C one predicts residual linewidths of 10 Hz for 15N and 45 Hz for 1HN, and for the corresponding uniformly 15N,2H-labeled protein the residual linewidths are predicted to be smaller than 5 Hz and 15 Hz, respectively. The TROSY principle should benefit a variety of multidimensional solution NMR experiments, especially with future use of yet somewhat higher polarizing magnetic fields than are presently available, and thus largely eliminate one of the key factors that limit work with larger molecules.
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              Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.

              A comparison of HSQC and HMQC pulse schemes for recording (1)H[bond](13)C correlation maps of protonated methyl groups in highly deuterated proteins is presented. It is shown that HMQC correlation maps can be as much as a factor of 3 more sensitive than their HSQC counterparts and that the sensitivity gains result from a TROSY effect that involves cancellation of intra-methyl dipolar relaxation interactions. (1)H[bond](13)C correlation spectra are recorded on U-[(15)N,(2)H], Ile delta 1-[(13)C,(1)H] samples of (i) malate synthase G, a 723 residue protein, at 37 and 5 degrees C, and of (ii) the protease ClpP, comprising 14 identical subunits, each with 193 residues (305 kDa), at 5 degrees C. The high quality of HMQC spectra obtained in short measuring times strongly suggests that methyl groups will be useful probes of structure and dynamics in supramolecular complexes.
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                Author and article information

                Contributors
                Journal
                J Magn Reson
                J. Magn. Reson
                Journal of Magnetic Resonance
                Elsevier
                1090-7807
                1096-0856
                1 September 2014
                September 2014
                : 246
                : 136-148
                Affiliations
                Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London WC1E 6BT, United Kingdom
                Author notes
                [* ]Corresponding author. Address: Institute of Structural and Molecular Biology, University College London, Gower Street, London WC1E 6BT, United Kingdom. d.hansen@ 123456ucl.ac.uk
                Article
                S1090-7807(14)00179-7
                10.1016/j.jmr.2014.06.010
                4283223
                25128779
                a1b931b4-71f1-47bb-ad27-b6fa1bae5f7e
                © 2014 The Authors
                History
                : 17 April 2014
                : 6 June 2014
                Categories
                Article

                Radiology & Imaging
                ax4 spin systems,nuclear spin relaxation,ammonium
                Radiology & Imaging
                ax4 spin systems, nuclear spin relaxation, ammonium

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