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      Bioecological Drivers of Rabies Virus Circulation in a Neotropical Bat Community

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          Abstract

          Introduction

          In addition to the commonly accepted importance of the vampire bat in the maintenance and transmission of the rabies virus (RABV) in South America, RABV infection of other species is widely evidenced, challenging their role in the viral cycle.

          Methodology / Principles findings

          To identify the bioecological drivers of RABV circulation in neotropical bat communities, we conducted a molecular and serological survey on almost 1,000 bats from 30 species, and a 4-year longitudinal survey in two colonies of vampire bats in French Guiana. RABV was molecularly detected in a common vampire and in a frugivorous bat. The sequences corresponded to haematophagous bat-related strains and were close to viruses circulating in the Brazilian Amazon region. Species’ seroprevalence ranged from 0 to 20%, and the risk of seropositivity was higher in bats with a haematophagous diet, living in monospecific colonies and in dense forests. The longitudinal survey showed substantial temporal fluctuations, with individual waves of seroconversions and waning immunity. The high prevalences observed in bat communities, in most habitats and in species that do not share the same microhabitats and bioecological patterns, the temporal variations, and a rather short period of detectable antibodies as observed in recaptured vampires suggest (i) frequent exposure of animals, (ii) an ability of the infected host to control and eliminate the virus, (iii) more relaxed modes of exposure between bats than the commonly assumed infection via direct contact with saliva of infected animals, all of which should be further investigated.

          Conclusions / significance

          We hypothesize that RABV circulation in French Guiana is mainly maintained in the pristine forest habitats that may provide sufficient food resources to allow vampire bats, the main prevalent species, to survive and RABV to be propagated. However, on the forest edge and in disturbed areas, human activities may induce more insidious effects such as defaunation. One of the ecological consequences is the disappearance of resources for tertiary or secondary consumers. Populations of vampires may then shift to alternative resources such as cattle, domestic animals and humans. Therefore, a good forest status, allowing both a dilution effect in highly rich bat communities and the maintenance of large populations of medium-sized and large mammals used as prey by vampires, should prevent their migration to anthropized areas.

          Author Summary

          The vampire bat is known to be the main reservoir of the rabies virus (RABV) in South America. Nevertheless, other bat species are implicated in the cycle of the virus. Indeed, seven genus-specific rabies lineages have been described in insectivorous bats in Brazil. In French Guiana, we looked for the presence of the virus in a large number of bats, belonging to 30 different species. We found a high rate of seropositive animals, mainly haematophagous bats, and in those living in monospecific colonies and in forest habitats. We also monitored two colonies of vampire bats over a 4-year period and found that some animals became seropositive for the RABV, while others, after being seropositive, were able to become seronegative. These data first of all demonstrate that the virus widely circulates in bat communities with transmission occurring via direct saliva contact with broken skin and mucosa at the intra-specific level in vampire bat species. Exposure of other bat species, including those that do not share the same microhabitat, occurs in all forest strata through modes of transmission that have yet to be determined. Secondly, these animals seem to be exposed regularly, and most of them have a great ability to control and eliminate the virus. Third, these results suggest that pristine forest habitats provide sufficient food resources for the survival of vampire bats and propagation of RABV. In contrast, in disturbed habitats, where resources are decreasing, the vampires might have to shift to alternative resources such as cattle, domestic animals or even human beings. Altogether, the risk of rabies virus transmission may increase on the edge between forest and anthropized areas.

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          Most cited references45

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          The ecology of infectious disease: effects of host diversity and community composition on Lyme disease risk.

          The extent to which the biodiversity and community composition of ecosystems affect their functions is an issue that grows ever more compelling as human impacts on ecosystems increase. We present evidence that supports a novel function of vertebrate biodiversity, the buffering of human risk of exposure to Lyme-disease-bearing ticks. We tested the Dilution Effect model, which predicts that high species diversity in the community of tick hosts reduces vector infection prevalence by diluting the effects of the most competent disease reservoir, the ubiquitous white-footed mouse (Peromyscus leucopus). As habitats are degraded by fragmentation or other anthropogenic forces, some members of the host community disappear. Thus, species-poor communities tend to have mice, but few other hosts, whereas species-rich communities have mice, plus many other potential hosts. We demonstrate that the most common nonmouse hosts are relatively poor reservoirs for the Lyme spirochete and should reduce the prevalence of the disease by feeding, but rarely infecting, ticks. By accounting for nearly every host species' contribution to the number of larval ticks fed and infected, we show that as new host species are added to a depauperate community, the nymphal infection prevalence, a key risk factor, declines. We identify important "dilution hosts" (e.g., squirrels), characterized by high tick burdens, low reservoir competence, and high population density, as well as "rescue hosts" (e.g., shrews), which are capable of maintaining high disease risk when mouse density is low. Our study suggests that the preservation of vertebrate biodiversity and community composition can reduce the incidence of Lyme disease.
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            Host phylogeny constrains cross-species emergence and establishment of rabies virus in bats.

            For RNA viruses, rapid viral evolution and the biological similarity of closely related host species have been proposed as key determinants of the occurrence and long-term outcome of cross-species transmission. Using a data set of hundreds of rabies viruses sampled from 23 North American bat species, we present a general framework to quantify per capita rates of cross-species transmission and reconstruct historical patterns of viral establishment in new host species using molecular sequence data. These estimates demonstrate diminishing frequencies of both cross-species transmission and host shifts with increasing phylogenetic distance between bat species. Evolutionary constraints on viral host range indicate that host species barriers may trump the intrinsic mutability of RNA viruses in determining the fate of emerging host-virus interactions.
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              The origin and phylogeography of dog rabies virus.

              Rabies is a progressively fatal and incurable viral encephalitis caused by a lyssavirus infection. Almost all of the 55 000 annual rabies deaths in humans result from infection with dog rabies viruses (RABV). Despite the importance of rabies for human health, little is known about the spread of RABV in dog populations, and patterns of biodiversity have only been studied in limited geographical space. To address these questions on a global scale, we sequenced 62 new isolates and performed an extensive comparative analysis of RABV gene sequence data, representing 192 isolates sampled from 55 countries. From this, we identified six clades of RABV in non-flying mammals, each of which has a distinct geographical distribution, most likely reflecting major physical barriers to gene flow. Indeed, a detailed analysis of phylogeographic structure revealed only limited viral movement among geographical localities. Using Bayesian coalescent methods we also reveal that the sampled lineages of canid RABV derive from a common ancestor that originated within the past 1500 years. Additionally, we found no evidence for either positive selection or widespread population bottlenecks during the global expansion of canid RABV. Overall, our study reveals that the stochastic processes of genetic drift and population subdivision are the most important factors shaping the global phylogeography of canid RABV.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                plosntds
                PLoS Neglected Tropical Diseases
                Public Library of Science (San Francisco, CA USA )
                1935-2727
                1935-2735
                25 January 2016
                January 2016
                : 10
                : 1
                : e0004378
                Affiliations
                [1 ]Laboratoire des Interactions Virus-Hôtes, Institut Pasteur de la Guyane, Cayenne, French Guiana
                [2 ]Lyssavirus Dynamics and Host adaptation Unit, National Reference Centre for Rabies, Institut Pasteur, Paris, France
                [3 ]Sylvétude, Office National des Forêts, Cayenne, French Guiana
                [4 ]Laboratoire de Biométrie et Biologie évolutive, UMR CNRS 5558, Université Lyon 1 / CNRS, Villeurbanne, France
                Armed Forces Health Surveillance Center, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                Conceived and designed the experiments: BdT AL VL HB. Performed the experiments: BdT AL ED DD AG RL LD FL. Analyzed the data: BdT HB DP AL. Contributed reagents/materials/analysis tools: BdT MD HB DP FL AS VL AL. Wrote the paper: BdT VL AL HB DP LD MD.

                ‡ These authors contributed equally to this work and are alphabetically ordered.

                Article
                PNTD-D-15-01430
                10.1371/journal.pntd.0004378
                4726525
                26808820
                9acdb28f-e388-4fa8-8d0c-191e9c5cfc7a
                © 2016 de Thoisy et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 19 August 2015
                : 18 December 2015
                Page count
                Figures: 4, Tables: 2, Pages: 21
                Funding
                This study was conducted within the ViRUSES and CAROLIA programs supported by European funds (ERDF/FEDER) and assistance from Région Guyane and Direction Régionale pour la Recherche et la Technologie. It also received a European commission "REGPOT-CT-2011-285837-STRonGer" grant within the FP7 and "Investissement d’Avenir" Grants managed by Agence Nationale de la Recherche (CEBA, Ref. ANR-10- LABX-25-01; ECOFECT, Ref. ANR-11-LABX-0048). The authors thank the Institut de Veille Sanitaire, Saint-Maurice, France ( http://www.invs.sante.fr/) and the Institut Pasteur for their financial contribution to the National Reference Centre for Rabies that made this work possible. This research was also funded by the European Union Seventh Framework Programme (FP7/2007-2013) PREDEMICS grant 278433. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript
                Categories
                Research Article
                Biology and Life Sciences
                Organisms
                Animals
                Vertebrates
                Mammals
                Bats
                Biology and life sciences
                Organisms
                Viruses
                RNA viruses
                Lyssavirus
                Rabies Virus
                Biology and Life Sciences
                Microbiology
                Medical Microbiology
                Microbial Pathogens
                Viral Pathogens
                Lyssavirus
                Rabies Virus
                Medicine and Health Sciences
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                Pathogens
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                Habitats
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Serology
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                Tropical Diseases
                Neglected Tropical Diseases
                Rabies
                Medicine and Health Sciences
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                Medicine and Health Sciences
                Infectious Diseases
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                Biology and Life Sciences
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                Custom metadata
                Sequences are available on Genbank: KT023100, KT023101, KT276358, KT276360 to KT2763688, KT276359, KU295471-KU295500.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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