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      Yttrium- and zirconium-decorated Mg 12O 12–X (X = Y, Zr) nanoclusters as sensors for diazomethane (CH 2N 2) gas†

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          Abstract

          Diazomethane (CH 2N 2) presents a notable hazard as a respiratory irritant, resulting in various adverse effects upon exposure. Consequently, there has been increasing concern in the field of environmental research to develop a sensor material that exhibits heightened sensitivity and conductivity for the detection and adsorption of this gas. Therefore, this study aims to provide a comprehensive analysis of the geometric structure of three systems: CH 2N 2@MgO (C1), CH 2N 2@YMgO (CY1), and CH 2N 2@ZrMgO (CZ1), in addition to pristine MgO nanocages. The investigation involves a theoretical analysis employing the DFT/ωB97XD method at the GenECP/6-311++G(d,p)/SDD level of theory. Notably, the examination of bond lengths within the MgO cage yielded specific values, including Mg15–O4 (1.896 Å), Mg19–O4 (1.952 Å), and Mg23–O4 (1.952 Å), thereby offering valuable insights into the structural properties and interactions with CH 2N 2 gas. Intriguingly, after the interaction, bond length variations were observed, with CH 2N 2@MgO exhibiting shorter bonds and CH 2N 2@YMgO showcasing longer bonds. Meanwhile, CH 2N 2@ZrMgO displayed shorter bonds, except for a longer bond in Mg19–O4, suggesting increased stability due to shorter bond distances. The study further investigated the electronic properties, revealing changes in the energy gap that influenced electrical conductivity and sensitivity. The energy gap increased for Zr@MgO, CH 2N 2@MgO, CH 2N 2@YMgO, and CH 2N 2@ZrMgO, indicating weak interactions on the MgO surface. Conversely, Y@MgO showed a decrease in energy, suggesting a strong interaction. The pure MgO surface exhibited the ability to donate and accept electrons, resulting in an energy gap of 4.799 eV. Surfaces decorated with yttrium and zirconium exhibited decreased energies of the highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO), as well as decreased energy gap, indicating increased conductivity and sensitivity. Notably, Zr@MgO had the highest energy gap before CH 2N 2 adsorption, but C1 exhibited a significantly higher energy gap after adsorption, implying increased conductivity and sensitivity. The study also examined the density of states, demonstrating significant variations in the electronic properties of MgO and its decorated surfaces due to CH 2N 2 adsorption. Moreover, various analysis techniques were employed, including natural bond orbital (NBO), quantum theory of atoms in molecules (QTAIM), and noncovalent interaction (NCI) analysis, which provided insights into bonding, charge density, and intermolecular interactions. The findings contribute to a deeper understanding of the sensing mechanisms of CH 2N 2 gas on nanocage surfaces, shedding light on adsorption energy, conductivity, and recovery time. These results hold significance for gas-sensing applications and provide a basis for further exploration and development in this field.

          Abstract

          Azomethane (CH 2N 2) presents a notable hazard as a respiratory irritant, resulting in various adverse effects upon exposure. Environmental research seeks sensitive sensor materials for its detection. This study analyzes CH 2N 2 adsorption on nanocages (C1, CY1, CZ1) and pristine MgO using DFT/ωB97XD method.

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          Avogadro: an advanced semantic chemical editor, visualization, and analysis platform

          Background The Avogadro project has developed an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible, high quality rendering, and a powerful plugin architecture. Typical uses include building molecular structures, formatting input files, and analyzing output of a wide variety of computational chemistry packages. By using the CML file format as its native document type, Avogadro seeks to enhance the semantic accessibility of chemical data types. Results The work presented here details the Avogadro library, which is a framework providing a code library and application programming interface (API) with three-dimensional visualization capabilities; and has direct applications to research and education in the fields of chemistry, physics, materials science, and biology. The Avogadro application provides a rich graphical interface using dynamically loaded plugins through the library itself. The application and library can each be extended by implementing a plugin module in C++ or Python to explore different visualization techniques, build/manipulate molecular structures, and interact with other programs. We describe some example extensions, one which uses a genetic algorithm to find stable crystal structures, and one which interfaces with the PackMol program to create packed, solvated structures for molecular dynamics simulations. The 1.0 release series of Avogadro is the main focus of the results discussed here. Conclusions Avogadro offers a semantic chemical builder and platform for visualization and analysis. For users, it offers an easy-to-use builder, integrated support for downloading from common databases such as PubChem and the Protein Data Bank, extracting chemical data from a wide variety of formats, including computational chemistry output, and native, semantic support for the CML file format. For developers, it can be easily extended via a powerful plugin mechanism to support new features in organic chemistry, inorganic complexes, drug design, materials, biomolecules, and simulations. Avogadro is freely available under an open-source license from http://avogadro.openmolecules.net.
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            A simple measure of electron localization in atomic and molecular systems

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              The new age of carbon nanotubes: an updated review of functionalized carbon nanotubes in electrochemical sensors.

              Since the discovery of carbon nanotubes (CNTs), they have drawn considerable research attention and have shown great potential application in many fields due to their unique structural, mechanical, and electronic properties. However, their native insolubility severely holds back the process of application. In order to overcome this disadvantage and broaden the scope of their application, chemical functionalization of CNTs has attracted great interest over the past several decades and produced various novel hybrid materials with specific applications. Notably, the rapid development of functionalized CNTs used as electrochemical sensors has been successfully witnessed. In this featured article, the recent progress of electrochemical sensors based on functionalized CNTs is discussed and classified according to modifiers covering organic (oxygen functional groups, small organic molecules, polymers, DNA, protein, etc.), inorganic (metal nanoparticles, metal oxide, etc.) and organic-inorganic hybrids. By employing some representative examples, it will be demonstrated that functionalized CNTs as templates, carriers, immobilizers and transducers are promising for the construction of electrochemical sensors. This journal is © The Royal Society of Chemistry 2012
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                Author and article information

                Journal
                RSC Adv
                RSC Adv
                RA
                RSCACL
                RSC Advances
                The Royal Society of Chemistry
                2046-2069
                24 August 2023
                21 August 2023
                24 August 2023
                : 13
                : 36
                : 25391-25407
                Affiliations
                [a ] Computational and Bio-Simulation Research Group, University of Calabar Calabar Nigeria louismuzong@ 123456gmail.com
                [b ] Department of Pure and Applied Chemistry, Faculty of Physical Sciences, University of Calabar Calabar Nigeria
                [c ] Department of Mathematics, Faculty of Physical Sciences, University of Calabar Calabar Nigeria
                [d ] Department of Chemical Sciences, Federal University of Wukari Wukari Taraba State Nigeria
                [e ] Department of Chemical Sciences, University of Johannesburg South Africa
                [f ] Centre for Herbal Pharmacology and Environmental Sustainability, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education Kelambakkam-603103 Tamil Nadu India
                Author information
                https://orcid.org/0000-0002-1901-3675
                https://orcid.org/0000-0002-0286-2865
                Article
                d3ra02939e
                10.1039/d3ra02939e
                10448449
                37636506
                98ff5468-5d54-43fa-8926-0924c2c16cd2
                This journal is © The Royal Society of Chemistry
                History
                : 3 May 2023
                : 21 July 2023
                Page count
                Pages: 17
                Categories
                Chemistry
                Custom metadata
                Paginated Article

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