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      Prognostic Prediction of Genotype vs Phenotype in Genetic Cardiomyopathies

      research-article
      , MD a , , MD a , , MD a , , PhD b , , MS c , , PhD c , , MD a , , MD a , , MD a , , MD a , c , , MD a , , MD d , , MD a , , BS c , , PhD e , , MSc e , , PhD e , f , , MD, PhD e , f , , PhD g , , MD, PhD d , g , , MD, PhD f , g , , MD a , , MD, PhD c , , MD c , , MD a , f
      Journal of the American College of Cardiology
      ALVC, ARVC, DCM, genotype, pathogenic/likely pathogenic variants, phenotype

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          Abstract

          BACKGROUND

          Diverse genetic backgrounds often lead to phenotypic heterogeneity in cardiomyopathies (CMPs). Previous genotype-phenotype studies have primarily focused on the analysis of a single phenotype, and the diagnostic and prognostic features of the CMP genotype across different phenotypic expressions remain poorly understood.

          OBJECTIVES

          We sought to define differences in outcome prediction when stratifying patients based on phenotype at presentation compared with genotype in a large cohort of patients with CMPs and positive genetic testing.

          METHODS

          Dilated cardiomyopathy (DCM), arrhythmogenic right ventricular cardiomyopathy, left-dominant arrhythmogenic cardiomyopathy, and biventricular arrhythmogenic cardiomyopathy were examined in this study. A total of 281 patients (80% DCM) with pathogenic or likely pathogenic variants were included. The primary and secondary outcomes were: 1) all-cause mortality (D)/heart transplant (HT); 2) sudden cardiac death/major ventricular arrhythmias (SCD/MVA); and 3) heart failure–related death (DHF)/HT/left ventricular assist device implantation (LVAD).

          RESULTS

          Survival analysis revealed that SCD/MVA events occurred more frequently in patients without a DCM phenotype and in carriers of DSP, PKP2, LMNA, and FLNC variants. However, after adjustment for age and sex, genotype-based classification, but not phenotype-based classification, was predictive of SCD/MVA. LMNA showed the worst trends in terms of D/HT and DHF/HT/LVAD.

          CONCLUSIONS

          Genotypes were associated with significant phenotypic heterogeneity in genetic cardiomyopathies. Nevertheless, in our study, genotypic-based classification showed higher precision in predicting the outcome of patients with CMP than phenotype-based classification. These findings add to our current understanding of inherited CMPs and contribute to the risk stratification of patients with positive genetic testing.

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          Most cited references38

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          Standards and Guidelines for the Interpretation of Sequence Variants: A Joint Consensus Recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology

          The American College of Medical Genetics and Genomics (ACMG) previously developed guidance for the interpretation of sequence variants. 1 In the past decade, sequencing technology has evolved rapidly with the advent of high-throughput next generation sequencing. By adopting and leveraging next generation sequencing, clinical laboratories are now performing an ever increasing catalogue of genetic testing spanning genotyping, single genes, gene panels, exomes, genomes, transcriptomes and epigenetic assays for genetic disorders. By virtue of increased complexity, this paradigm shift in genetic testing has been accompanied by new challenges in sequence interpretation. In this context, the ACMG convened a workgroup in 2013 comprised of representatives from the ACMG, the Association for Molecular Pathology (AMP) and the College of American Pathologists (CAP) to revisit and revise the standards and guidelines for the interpretation of sequence variants. The group consisted of clinical laboratory directors and clinicians. This report represents expert opinion of the workgroup with input from ACMG, AMP and CAP stakeholders. These recommendations primarily apply to the breadth of genetic tests used in clinical laboratories including genotyping, single genes, panels, exomes and genomes. This report recommends the use of specific standard terminology: ‘pathogenic’, ‘likely pathogenic’, ‘uncertain significance’, ‘likely benign’, and ‘benign’ to describe variants identified in Mendelian disorders. Moreover, this recommendation describes a process for classification of variants into these five categories based on criteria using typical types of variant evidence (e.g. population data, computational data, functional data, segregation data, etc.). Because of the increased complexity of analysis and interpretation of clinical genetic testing described in this report, the ACMG strongly recommends that clinical molecular genetic testing should be performed in a CLIA-approved laboratory with results interpreted by a board-certified clinical molecular geneticist or molecular genetic pathologist or equivalent.
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            Recommendations for cardiac chamber quantification by echocardiography in adults: an update from the American Society of Echocardiography and the European Association of Cardiovascular Imaging.

            The rapid technological developments of the past decade and the changes in echocardiographic practice brought about by these developments have resulted in the need for updated recommendations to the previously published guidelines for cardiac chamber quantification, which was the goal of the joint writing group assembled by the American Society of Echocardiography and the European Association of Cardiovascular Imaging. This document provides updated normal values for all four cardiac chambers, including three-dimensional echocardiography and myocardial deformation, when possible, on the basis of considerably larger numbers of normal subjects, compiled from multiple databases. In addition, this document attempts to eliminate several minor discrepancies that existed between previously published guidelines. Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2015. For permissions please email: journals.permissions@oup.com.
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              2015 ESC Guidelines for the management of patients with ventricular arrhythmias and the prevention of sudden cardiac death: The Task Force for the Management of Patients with Ventricular Arrhythmias and the Prevention of Sudden Cardiac Death of the European Society of Cardiology (ESC). Endorsed by: Association for European Paediatric and Congenital Cardiology (AEPC).

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                Author and article information

                Journal
                8301365
                4429
                J Am Coll Cardiol
                J Am Coll Cardiol
                Journal of the American College of Cardiology
                0735-1097
                1558-3597
                13 December 2023
                22 November 2022
                28 December 2023
                : 80
                : 21
                : 1981-1994
                Affiliations
                [a ]Cardiovascular Department, Azienda Sanitaria Universitaria Giuliano Isontina (ASUGI), University of Trieste (a member of the European Reference Network for rare, low-prevalence, or complex diseases of the Heart [ERN GUARD-Heart]), Trieste, Italy;
                [b ]Biostatistics Unit, University of Trieste, Trieste, Italy;
                [c ]Cardiovascular Institute and Adult Medical Genetics Program, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA;
                [d ]King’s College London, British Heart Foundation Centre of Research Excellence, School of Cardiovascular Medicine and Sciences, London, United Kingdom;
                [e ]Institute for Maternal and Child Health-IRCCS, Burlo Garofolo, Trieste, Italy;
                [f ]Department of Medicine, Surgery and Health Sciences, University of Trieste, Trieste, Italy;
                [g ]International Center for Genetic Engineering and Biotechnology (ICGEB), Trieste, Italy.
                Author notes
                [*]

                Drs Paldino and Dal Ferro contributed equally to this work as joint first authors.

                ADDRESS FOR CORRESPONDENCE: Dr Matteo Dal Ferro, Cardiovascular Department, Azienda Sanitaria Universitaria Giuliano Isontina (ASUGI), Via Valdoni 7, Trieste 34149, Italy. matteo.dalferro@ 123456asugi.sanita.fvg.it .
                Article
                NIHMS1951865
                10.1016/j.jacc.2022.08.804
                10754019
                36396199
                981bcb5d-584b-4588-acea-dad26fff08b3

                This is an open access article under the CC BY-NC-ND license ( http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                Categories
                Article

                Cardiovascular Medicine
                alvc,arvc,dcm,genotype,pathogenic/likely pathogenic variants,phenotype
                Cardiovascular Medicine
                alvc, arvc, dcm, genotype, pathogenic/likely pathogenic variants, phenotype

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