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      Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems

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          Abstract

          Machine learning models are poised to make a transformative impact on chemical sciences by dramatically accelerating computational algorithms and amplifying insights available from computational chemistry methods. However, achieving this requires a confluence and coaction of expertise in computer science and physical sciences. This Review is written for new and experienced researchers working at the intersection of both fields. We first provide concise tutorials of computational chemistry and machine learning methods, showing how insights involving both can be achieved. We follow with a critical review of noteworthy applications that demonstrate how computational chemistry and machine learning can be used together to provide insightful (and useful) predictions in molecular and materials modeling, retrosyntheses, catalysis, and drug design.

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          Generalized Gradient Approximation Made Simple

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            Deep learning.

            Deep learning allows computational models that are composed of multiple processing layers to learn representations of data with multiple levels of abstraction. These methods have dramatically improved the state-of-the-art in speech recognition, visual object recognition, object detection and many other domains such as drug discovery and genomics. Deep learning discovers intricate structure in large data sets by using the backpropagation algorithm to indicate how a machine should change its internal parameters that are used to compute the representation in each layer from the representation in the previous layer. Deep convolutional nets have brought about breakthroughs in processing images, video, speech and audio, whereas recurrent nets have shone light on sequential data such as text and speech.
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              From ultrasoft pseudopotentials to the projector augmented-wave method

              Physical Review B, 59(3), 1758-1775
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                Author and article information

                Journal
                Chem Rev
                Chem Rev
                cr
                chreay
                Chemical Reviews
                American Chemical Society
                0009-2665
                1520-6890
                07 July 2021
                25 August 2021
                : 121
                : 16 , Machine Learning at the Atomic Scale
                : 9816-9872
                Affiliations
                []Department of Chemical and Petroleum Engineering Swanson School of Engineering, University of Pittsburgh , Pittsburgh, Pennsylvania 15261, United States
                []Department of Physics and Materials Science, University of Luxembourg , L-1511 Luxembourg City, Luxembourg
                []Accelerate Programme for Scientific Discovery , Department of Computer Science and Technology, 15 J. J. Thomson Avenue, Cambridge CB3 0FD, United Kingdom
                Cavendish Laboratory, University of Cambridge , J. J. Thomson Avenue, Cambridge CB3 0HE, United Kingdom
                [§ ]Department of Software Engineering and Theoretical Computer Science, Technische Universität Berlin , 10587, Berlin, Germany
                []Machine Learning Group, Technische Universität Berlin , 10587, Berlin, Germany
                []Department of Artificial Intelligence, Korea University , Anam-dong, Seongbuk-gu, Seoul, 02841, Korea;
                []Max-Planck-Institut für Informatik , 66123 Saarbrücken, Germany
                []Google Research , Brain Team, 10117 Berlin, Germany
                Author notes
                Author information
                https://orcid.org/0000-0002-6583-6322
                https://orcid.org/0000-0001-7532-3590
                https://orcid.org/0000-0002-3584-9632
                https://orcid.org/0000-0002-3861-7685
                https://orcid.org/0000-0002-1012-4854
                Article
                10.1021/acs.chemrev.1c00107
                8391798
                34232033
                8f4ef374-fa8d-46a3-ace5-42ea4cff459c
                © 2021 The Authors. Published by American Chemical Society

                Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works ( https://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 04 February 2021
                Funding
                Funded by: Institute for Information and Communications Technology Promotion, doi 10.13039/501100010418;
                Award ID: 2017-0-00451
                Funded by: Division of Chemical, Bioengineering, Environmental, and Transport Systems, doi 10.13039/100000146;
                Award ID: 1653392
                Funded by: Institute for Information and Communications Technology Promotion, doi 10.13039/501100010418;
                Award ID: 2019-0-00079
                Funded by: Bundesministerium für Bildung und Forschung, doi 10.13039/501100002347;
                Award ID: 01IS18037A
                Funded by: Bundesministerium für Bildung und Forschung, doi 10.13039/501100002347;
                Award ID: 031L0207D
                Funded by: Bundesministerium für Bildung und Forschung, doi 10.13039/501100002347;
                Award ID: 01IS14013A-E
                Funded by: Bundesministerium für Bildung und Forschung, doi 10.13039/501100002347;
                Award ID: 01IS18025A
                Funded by: Bundesministerium für Bildung und Forschung, doi 10.13039/501100002347;
                Award ID: 01GQ1115
                Funded by: Bundesministerium für Bildung und Forschung, doi 10.13039/501100002347;
                Award ID: 01GQ0850
                Funded by: Fonds National de la Recherche Luxembourg, doi 10.13039/501100001866;
                Award ID: PRIDE/15/10935404
                Funded by: Fonds National de la Recherche Luxembourg, doi 10.13039/501100001866;
                Award ID: 19/13511646
                Funded by: Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, doi 10.13039/501100001711;
                Award ID: P2ELP2-184408
                Funded by: Deutsche Forschungsgemeinschaft, doi 10.13039/501100001659;
                Award ID: EXC 2046/1
                Funded by: Deutsche Forschungsgemeinschaft, doi 10.13039/501100001659;
                Award ID: 390685689
                Funded by: H2020 European Research Council, doi 10.13039/100010663;
                Award ID: NA
                Funded by: Division of Chemical, Bioengineering, Environmental, and Transport Systems, doi 10.13039/100000146;
                Award ID: 1705592
                Categories
                Review
                Custom metadata
                cr1c00107
                cr1c00107

                Chemistry
                Chemistry

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