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      Derivatives and inverse of cascaded linear+nonlinear neural models

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          Abstract

          In vision science, cascades of Linear+ Nonlinear transforms are very successful in modeling a number of perceptual experiences. However, the conventional literature is usually too focused on only describing the forward input-output transform. Instead, in this work we present the mathematics of such cascades beyond the forward transform, namely the Jacobian matrices and the inverse. The fundamental reason for this analytical treatment is that it offers useful analytical insight into the psychophysics, the physiology, and the function of the visual system. For instance, we show how the trends of the sensitivity (volume of the discrimination regions) and the adaptation of the receptive fields can be identified in the expression of the Jacobian w.r.t. the stimulus. This matrix also tells us which regions of the stimulus space are encoded more efficiently in multi-information terms. The Jacobian w.r.t. the parameters shows which aspects of the model have bigger impact in the response, and hence their relative relevance. The analytic inverse implies conditions for the response and model parameters to ensure appropriate decoding. From the experimental and applied perspective, (a) the Jacobian w.r.t. the stimulus is necessary in new experimental methods based on the synthesis of visual stimuli with interesting geometrical properties, (b) the Jacobian matrices w.r.t. the parameters are convenient to learn the model from classical experiments or alternative goal optimization, and (c) the inverse is a promising model-based alternative to blind machine-learning methods for neural decoding that do not include meaningful biological information. The theory is checked by building and testing a vision model that actually follows a modular Linear+ Nonlinear program. Our illustrative derivable and invertible model consists of a cascade of modules that account for brightness, contrast, energy masking, and wavelet masking. To stress the generality of this modular setting we show examples where some of the canonical Divisive Normalization modules are substituted by equivalent modules such as the Wilson-Cowan interaction model (at the V1 cortex) or a tone-mapping model (at the retina).

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          Normalization as a canonical neural computation.

          There is increasing evidence that the brain relies on a set of canonical neural computations, repeating them across brain regions and modalities to apply similar operations to different problems. A promising candidate for such a computation is normalization, in which the responses of neurons are divided by a common factor that typically includes the summed activity of a pool of neurons. Normalization was developed to explain responses in the primary visual cortex and is now thought to operate throughout the visual system, and in many other sensory modalities and brain regions. Normalization may underlie operations such as the representation of odours, the modulatory effects of visual attention, the encoding of value and the integration of multisensory information. Its presence in such a diversity of neural systems in multiple species, from invertebrates to mammals, suggests that it serves as a canonical neural computation.
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            Identifying natural images from human brain activity.

            A challenging goal in neuroscience is to be able to read out, or decode, mental content from brain activity. Recent functional magnetic resonance imaging (fMRI) studies have decoded orientation, position and object category from activity in visual cortex. However, these studies typically used relatively simple stimuli (for example, gratings) or images drawn from fixed categories (for example, faces, houses), and decoding was based on previous measurements of brain activity evoked by those same stimuli or categories. To overcome these limitations, here we develop a decoding method based on quantitative receptive-field models that characterize the relationship between visual stimuli and fMRI activity in early visual areas. These models describe the tuning of individual voxels for space, orientation and spatial frequency, and are estimated directly from responses evoked by natural images. We show that these receptive-field models make it possible to identify, from a large set of completely novel natural images, which specific image was seen by an observer. Identification is not a mere consequence of the retinotopic organization of visual areas; simpler receptive-field models that describe only spatial tuning yield much poorer identification performance. Our results suggest that it may soon be possible to reconstruct a picture of a person's visual experience from measurements of brain activity alone.
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              Mean squared error: Love it or leave it? A new look at Signal Fidelity Measures

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                Author and article information

                Contributors
                Role: SoftwareRole: Writing – review & editing
                Role: SoftwareRole: Writing – review & editing
                Role: Writing – original draft
                Role: ConceptualizationRole: Funding acquisitionRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: Funding acquisitionRole: SoftwareRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                2018
                15 October 2018
                : 13
                : 10
                : e0201326
                Affiliations
                [1 ] Image Processing Lab., Univ. València, València, Spain
                [2 ] Instituto de Neurociencias, CSIC, Alicante, Spain
                [3 ] Information and Communication Technologies Dept., Univ. Pompeu Fabra, Barcelona, Spain
                Technische Universitat Chemnitz, GERMANY
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-1023-8325
                http://orcid.org/0000-0002-5684-8591
                Article
                PONE-D-18-18156
                10.1371/journal.pone.0201326
                6188639
                30321175
                8e104a1b-5474-435a-b512-eb9f8ab9af9d
                © 2018 Martinez-Garcia et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 29 November 2017
                : 11 July 2018
                Page count
                Figures: 15, Tables: 0, Pages: 49
                Funding
                Funded by: MINECO
                Award ID: TIN2013-50520
                Award Recipient :
                Funded by: MINECO
                Award ID: BFU2014-59776
                Award Recipient :
                Funded by: MINECO
                Award ID: TIN2015-71537
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100000781, European Research Council;
                Award ID: 306337
                Award Recipient :
                Funded by: ICREA
                Award ID: Academia Award
                Award Recipient :
                This work was partially funded by the Spanish Ministerio de Economia y Competitividad projects CICYT TEC2013-50520-EXP and CICYT BFU2014-59776-R, by the European Research Council, Starting Grant ref. 306337, by the Spanish government and FEDER Fund, grant ref. TIN2015-71537-P(MINECO/FEDER,UE), 1021, and by the ICREA Academia Award. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
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                Biology and Life Sciences
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                Psychophysics
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                Psychology
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                Neuroscience
                Sensory Perception
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                Psychophysics
                Physical Sciences
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                Electromagnetic Radiation
                Light
                Visible Light
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                Biology and Life Sciences
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                Sensory Perception
                Biology and Life Sciences
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                Sensory Perception
                Social Sciences
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                Sensory Perception
                Biology and Life Sciences
                Neuroscience
                Sensory Systems
                Physical Sciences
                Mathematics
                Algebra
                Linear Algebra
                Eigenvectors
                Research and Analysis Methods
                Bioassays and Physiological Analysis
                Custom metadata
                All image distortion files used in the model optimization are available from the publicly available TID database http://www.ponomarenko.info/tid2008.htm.

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