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      Circulating Microbial Signatures and Cardiovascular Death in Patients With ESRD

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          Abstract

          Introduction

          Patients with end-stage renal disease (ESRD) experience disproportionately high cardiovascular morbidity and mortality. Accumulating evidence suggests a role for the circulating microbiome in the pathogenesis of cardiovascular disease; however, little is known about its association with premature cardiovascular mortality in ESRD.

          Methods

          In a pilot case-control study of 17 hemodialysis patients who died of a cardiovascular event and 17 matched hemodialysis controls who remained alive during a median follow-up of 2.0 years, we compared the levels and composition of circulating microbiome, including Bacteria, Archaea, and Fungi, in serum samples by quantitative polymerase chain reaction and 16S or Internal Transcribed Spacer (ITS) ribosomal RNA (rRNA) sequencing, respectively. Associations of the circulating cell-free microbial signatures with clinical parameters and cardiovascular death were examined using the Spearman rank correlation and multivariable conditional logistic regression, respectively.

          Results

          Both 16S and ITS rRNA were detectable in all (except 3 for ITS) examined patients’ serum samples. Despite no significant difference in 16S rRNA levels and α diversity between cases and controls, taxonomic analysis demonstrated differential community membership between groups, with significantly greater Actinobacteria and less Proteobacteria observed in cases than in controls at the phylum level. Proportions of Actinobacteria and Proteobacteria phyla were significantly correlated with plasma nuclear factor erythroid 2−related factor 2 (Nrf2) levels (rho = −0.41 and 0.42, P = 0.015 and 0.013, respectively) and marginally associated with risk of cardiovascular death (adjusted odds ratios [95% confidence intervals] = 1.12 [0.98−1.29] and 0.88 [0.76−1.02] for 1% increase, respectively).

          Conclusion

          Alterations of the circulating cell-free microbial signatures may be associated with higher premature cardiovascular mortality in ESRD.

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          Most cited references57

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          QIIME allows analysis of high-throughput community sequencing data.

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            The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

            Abstract UNITE (https://unite.ut.ee/) is a web-based database and sequence management environment for the molecular identification of fungi. It targets the formal fungal barcode—the nuclear ribosomal internal transcribed spacer (ITS) region—and offers all ∼1 000 000 public fungal ITS sequences for reference. These are clustered into ∼459 000 species hypotheses and assigned digital object identifiers (DOIs) to promote unambiguous reference across studies. In-house and web-based third-party sequence curation and annotation have resulted in more than 275 000 improvements to the data over the past 15 years. UNITE serves as a data provider for a range of metabarcoding software pipelines and regularly exchanges data with all major fungal sequence databases and other community resources. Recent improvements include redesigned handling of unclassifiable species hypotheses, integration with the taxonomic backbone of the Global Biodiversity Information Facility, and support for an unlimited number of parallel taxonomic classification systems.
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              Clinical epidemiology of cardiovascular disease in chronic renal disease.

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                Author and article information

                Contributors
                Journal
                Kidney Int Rep
                Kidney Int Rep
                Kidney International Reports
                Elsevier
                2468-0249
                04 August 2021
                October 2021
                04 August 2021
                : 6
                : 10
                : 2617-2628
                Affiliations
                [1 ]Division of Nephrology, Department of Medicine, University of Tennessee Health Science Center, Memphis, Tennessee, USA
                [2 ]Department of Pediatrics, College of Medicine, University of Tennessee Health Science Center, Memphis, Tennessee, USA
                [3 ]Department of Microbiology, Immunology, and Biochemistry, College of Medicine, University of Tennessee Health Science Center, Memphis, Tennessee, USA
                [4 ]Division of Cardiology, Department of Medicine, New York Presbyterian Hospital, Columbia University, New York, New York, USA
                [5 ]Division of Epidemiology and Community Health, School of Public Health, University of Minnesota, Minneapolis, Minnesota, USA
                [6 ]Division of Epidemiology, Mailman School of Public Health, Columbia University, New York, New York, USA
                [7 ]Department of Biostatistics, University of Florida, Gainesville, Florida, USA
                [8 ]Nephrology Section, Memphis VA Medical Center, Memphis, Tennessee, USA
                Author notes
                [] Correspondence: Keiichi Sumida, Division of Nephrology, Department of Medicine, University of Tennessee Health Science Center, 956 Court Avenue, Suite A220, Memphis, Tennessee 38163, USA. ksumida@ 123456uthsc.edu
                [9]

                These authors contributed equally to the manuscript.

                Article
                S2468-0249(21)01347-4
                10.1016/j.ekir.2021.07.023
                8484116
                34622101
                889d14a5-8123-4b97-ab76-f8c67738b779
                © 2021 International Society of Nephrology. Published by Elsevier Inc.

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 20 May 2021
                : 9 July 2021
                : 19 July 2021
                Categories
                Clinical Research

                cardiovascular disease,chronic kidney disease,circulating microbiome,end-stage renal disease,inflammation,mortality

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