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      Abnormal myosin post‐translational modifications and ATP turnover time associated with human congenital myopathy‐related RYR1 mutations

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          Abstract

          Aim

          Conditions related to mutations in the gene encoding the skeletal muscle ryanodine receptor 1 ( RYR1) are genetic muscle disorders and include congenital myopathies with permanent weakness, as well as episodic phenotypes such as rhabdomyolysis/myalgia. Although RYR1 dysfunction is the primary mechanism in RYR1‐related disorders, other downstream pathogenic events are less well understood and may include a secondary remodeling of major contractile proteins. Hence, in the present study, we aimed to investigate whether congenital myopathy‐related RYR1 mutations alter the regulation of the most abundant contractile protein, myosin.

          Methods

          We used skeletal muscle tissues from five patients with RYR1‐related congenital myopathy and compared those with five controls and five patients with RYR1‐related rhabdomyolysis/myalgia. We then defined post‐translational modifications on myosin heavy chains (MyHCs) using LC/MS. In parallel, we determined myosin relaxed states using Mant‐ATP chase experiments and performed molecular dynamics (MD) simulations.

          Results

          LC/MS revealed two additional phosphorylations (Thr1309‐P and Ser1362‐P) and one acetylation (Lys1410‐Ac) on the β/slow MyHC of patients with congenital myopathy. This method also identified six acetylations that were lacking on MyHC type IIa of these patients (Lys35‐Ac, Lys663‐Ac, Lys763‐Ac, Lys1171‐Ac, Lys1360‐Ac, and Lys1733‐Ac). MD simulations suggest that modifying myosin Ser1362 impacts the protein structure and dynamics. Finally, Mant‐ATP chase experiments showed a faster ATP turnover time of myosin heads in the disordered–relaxed conformation.

          Conclusions

          Altogether, our results suggest that RYR1 mutations have secondary negative consequences on myosin structure and function, likely contributing to the congenital myopathic phenotype.

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          Most cited references51

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          VMD: Visual molecular dynamics

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            The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences

            The PRoteomics IDEntifications (PRIDE) database ( https://www.ebi.ac.uk/pride/ ) is the world's largest data repository of mass spectrometry-based proteomics data. PRIDE is one of the founding members of the global ProteomeXchange (PX) consortium and an ELIXIR core data resource. In this manuscript, we summarize the developments in PRIDE resources and related tools since the previous update manuscript was published in Nucleic Acids Research in 2019. The number of submitted datasets to PRIDE Archive (the archival component of PRIDE) has reached on average around 500 datasets per month during 2021. In addition to continuous improvements in PRIDE Archive data pipelines and infrastructure, the PRIDE Spectra Archive has been developed to provide direct access to the submitted mass spectra using Universal Spectrum Identifiers. As a key point, the file format MAGE-TAB for proteomics has been developed to enable the improvement of sample metadata annotation. Additionally, the resource PRIDE Peptidome provides access to aggregated peptide/protein evidences across PRIDE Archive. Furthermore, we will describe how PRIDE has increased its efforts to reuse and disseminate high-quality proteomics data into other added-value resources such as UniProt, Ensembl and Expression Atlas.
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              Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

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                Author and article information

                Contributors
                julien.ochala@sund.ku.dk
                Journal
                Acta Physiol (Oxf)
                Acta Physiol (Oxf)
                10.1111/(ISSN)1748-1716
                APHA
                Acta Physiologica (Oxford, England)
                John Wiley and Sons Inc. (Hoboken )
                1748-1708
                1748-1716
                21 August 2023
                October 2023
                : 239
                : 2 ( doiID: 10.1111/apha.v239.2 )
                : e14035
                Affiliations
                [ 1 ] Department of Biomedical Sciences, Faculty of Health and Medical Sciences University of Copenhagen Copenhagen Denmark
                [ 2 ] Department of Chemistry, School of Physical and Chemical Sciences Queen Mary University of London London UK
                [ 3 ] Department of Orthopaedic Surgery, Institute of Sports Medicine Copenhagen Copenhagen University Hospital, Bispebjerg and Frederiksberg Copenhagen Denmark
                [ 4 ] Center for Healthy Aging, Department of Clinical Medicine University of Copenhagen Copenhagen Denmark
                [ 5 ] Department of Paediatric Neurology Evelina London Children's Hospital London UK
                [ 6 ] Randall Centre for Cell and Molecular Biophysics, Muscle Signalling Section, Faculty of Life Sciences and Medicine King's College London London UK
                [ 7 ] Copenhagen Neuromuscular Center, Department of Neurology University of Copenhagen Copenhagen Denmark
                [ 8 ] Departamento de Neurologia, Faculdade de Medicina, Hospital das Clínicas Universidade de São Paulo São Paulo Brazil
                Author notes
                [*] [* ] Correspondence

                Julien Ochala, Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

                Email: julien.ochala@ 123456sund.ku.dk

                Article
                APHA14035 APH-2023-05-0253.R3
                10.1111/apha.14035
                10909445
                37602753
                83517f1d-0f8e-400e-972e-3364f1dfce88
                © 2023 The Authors. Acta Physiologica published by John Wiley & Sons Ltd on behalf of Scandinavian Physiological Society.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 07 August 2023
                : 30 May 2023
                : 08 August 2023
                Page count
                Figures: 6, Tables: 2, Pages: 14, Words: 6894
                Funding
                Funded by: Carlsbergfondet , doi 10.13039/501100002808;
                Award ID: CF20‐0113
                Funded by: Novo Nordisk Fonden , doi 10.13039/501100009708;
                Award ID: NNF19SA0059305
                Award ID: NNF‐0070539
                Funded by: Muscular Dystrophy UK , doi 10.13039/100011724;
                Award ID: 19GRO‐PS48‐0146
                Funded by: Engineering and Physical Sciences Research Council (EPSRC) through the Doctoral Training Partnership with Queen Mary University of London , doi 10.13039/501100000266;
                Award ID: EP/R029407/1
                Award ID: EP/R513106/1
                Categories
                Research Paper
                Research Papers
                Custom metadata
                2.0
                October 2023
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.3.8 mode:remove_FC converted:03.03.2024

                Anatomy & Physiology
                acetylation,atp,congenital myopathy,myosin heavy chain,phosphorylation,relaxed state,skeletal muscle

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