Pauline Misson: Role: Formal analysisRole: InvestigationRole: MethodologyRole: SoftwareRole: ValidationRole:
VisualizationRole: Writing – review & editing
Emma Bruder: Role: Formal analysisRole: InvestigationRole: MethodologyRole: SoftwareRole: ValidationRole:
VisualizationRole: Writing – review & editing
Jeffrey K. Cornuault: Role: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: VisualizationRole:
Writing – review & editing
Marianne De Paepe: Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
SoftwareRole: ValidationRole: VisualizationRole: Writing – review & editing
Pierre Nicolas: Role: Data curationRole: MethodologyRole: SoftwareRole: ValidationRole: Visualization
Gaëlle Demarre: Role: InvestigationRole: Methodology
Goran Lakisic: Role: Data curationRole: MethodologyRole: SoftwareRole: ValidationRole: Visualization
Marie-Agnès Petit: Role: ConceptualizationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole:
MethodologyRole: ResourcesRole: SoftwareRole: ValidationRole: VisualizationRole: Writing
– original draftRole: Writing – review & editing
Olivier Espeli: Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
SoftwareRole: ValidationRole: VisualizationRole: Writing – review & editing
François Lecointe:
ORCID: https://orcid.org/0000-0002-9596-2514
Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole:
MethodologyRole: Project administrationRole: ResourcesRole: SoftwareRole: SupervisionRole:
ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review
& editing
William Navarre: Role: Editor
Journal ID (nlm-ta): PLoS Pathog
Journal ID (iso-abbrev): PLoS Pathog
Journal ID (publisher-id): plos
Title:
PLOS Pathogens
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1553-7366
ISSN
(Electronic):
1553-7374
Publication date
(Electronic):
2
February
2023
Publication date Collection:
February
2023
Volume: 19
Issue: 2
Electronic Location Identifier: e1011127
Affiliations
[1
]
Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France
[2
]
Center for Interdisciplinary Research in Biology (CIRB), College de France, CNRS,
INSERM, Université PSL, Paris, France
[3
]
Université Paris-Saclay, INRAE, MaIAGE, Jouy-en-Josas, France
University of Toronto, CANADA
Author notes
The authors have declared that no competing interests exist.
Author information
Article
Publisher ID:
PPATHOGENS-D-22-00340
DOI: 10.1371/journal.ppat.1011127
PMC ID: 9928086
PubMed ID: 36730457
SO-VID: 82bf38c8-4d18-4486-8c6a-ab90f52545c4
Copyright © © 2023 Misson et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by:
Agence Nationale de la Recherche
Award ID: ANR-18-CE35-0007
Award Recipient
:
Marie-Agnès Petit
Funded by:
Ministère de l'enseignement supérieur et de la recherche
Award Recipient
:
Pauline Misson
Funded by:
INRAE
Award Recipient
:
Pauline Misson
Funded by:
Ministère de l'enseignement supérieur et de la recherche
Award Recipient
:
Emma Bruder
This work was supported by the Agence Nationale de la Recherche
https://anr.fr (Persist3R contract, reference: ANR-18-CE35-0007, Grant recipient: M-A. P.). P.M.
was supported by a fellowship from the French Ministère de l’Enseignement Supérieur
et de la Recherche and from the MICA division of INRAE. E.B. was supported by a fellowship
from the French Ministère de l’Enseignement Supérieur et de la Recherche. The funders
had no role in study design, data collection and analysis, decision to publish, or
preparation of the manuscript.
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Cellular Types
Subject:
Animal Cells
Subject:
Blood Cells
Subject:
White Blood Cells
Subject:
Macrophages
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Cellular Types
Subject:
Animal Cells
Subject:
Immune Cells
Subject:
White Blood Cells
Subject:
Macrophages
Subject:
Biology and Life Sciences
Subject:
Immunology
Subject:
Immune Cells
Subject:
White Blood Cells
Subject:
Macrophages
Subject:
Medicine and Health Sciences
Subject:
Immunology
Subject:
Immune Cells
Subject:
White Blood Cells
Subject:
Macrophages
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Viruses
Subject:
Bacteriophages
Subject:
Research and Analysis Methods
Subject:
Animal Studies
Subject:
Experimental Organism Systems
Subject:
Model Organisms
Subject:
Escherichia Coli
Subject:
Research and Analysis Methods
Subject:
Model Organisms
Subject:
Escherichia Coli
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Medical Microbiology
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Escherichia Coli
Subject:
Medicine and Health Sciences
Subject:
Pathology and Laboratory Medicine
Subject:
Pathogens
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Escherichia Coli
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Bacteria
Subject:
Enterobacteriaceae
Subject:
Escherichia
Subject:
Escherichia Coli
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Bacteria
Subject:
Gut Bacteria
Subject:
Escherichia
Subject:
Escherichia Coli
Subject:
Research and Analysis Methods
Subject:
Animal Studies
Subject:
Experimental Organism Systems
Subject:
Prokaryotic Models
Subject:
Escherichia Coli
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Virology
Subject:
Viral Structure
Subject:
Virions
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Artificial Gene Amplification and Extension
Subject:
Polymerase Chain Reaction
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Artificial Gene Amplification and Extension
Subject:
Polymerase Chain Reaction
Subject:
Biology and life sciences
Subject:
Biochemistry
Subject:
Proteins
Subject:
DNA-binding proteins
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Microbial Genomics
Subject:
Viral Genomics
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Microbial Genomics
Subject:
Viral Genomics
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Virology
Subject:
Viral Genomics
Subject:
Medicine and Health Sciences
Subject:
Pharmacology
Subject:
Drugs
Subject:
Antimicrobials
Subject:
Antibiotics
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Microbial Control
Subject:
Antimicrobials
Subject:
Antibiotics