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      Mapping of Tilapia Lake Virus entry pathways with inhibitors reveals dependence on dynamin activity and cholesterol but not endosomal acidification

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          Abstract

          Tilapia Lake Virus (TiLV) is an emerging virus lethal to tilapia, which threatens the global tilapia aquaculture with severe implications for food security. TiLV possesses similar features to orthomyxoviruses but is classified in the sole and the monotypic genus Tilapinevirus of the family Amnoonviridae. TiLV enveloped virions encapsidate a genome comprising ten segments of single-stranded, negative RNA. Remarkably, nine of TiLV’s ten major proteins lack sequence homology to any known viral or cellular proteins. The mode of TiLV entry into tilapia cells is not known. Following the measurement of the entry window of TiLV (∼3 h), we applied a panel of inhibitors of known regulators of endocytic functions to map the molecular requirements for TiLV entry. We identified productive entry by quantification of TiLV nucleoprotein expression and the generation of infectious particles. Inhibition of dynamin activity with dynasore or dynole, or depletion of cholesterol with methyl-β-cyclodextrin, strongly inhibited TiLV protein synthesis and infectious virion production. Moreover, inhibition of actin cytoskeleton polymerization with latrunculin A or microtubule polymerization with nocodazole within the entry window resulted in partial inhibition of TiLV infection. In contrast, inhibitors of endosomal acidification (NH 4Cl, bafilomycin A1, or chloroquine), an inhibitor of clathrin-coated pit assembly (pitstop 2), and erlotinib—an inhibitor of the endocytic Cyclin G-associated kinase (GAK), did not affect TiLV entry. Altogether, these results suggest that TiLV enters via dynamin-mediated endocytosis in a cholesterol-, cytoskeleton-dependent manner, and clathrin-, pH-independent manner. Thus, despite being an orthomyxo-like virus, when compared to the prototypical orthomyxovirus (influenza A virus), TiLV shows a distinct set of requirements for entry into cells.

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          Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

          The two most commonly used methods to analyze data from real-time, quantitative PCR experiments are absolute quantification and relative quantification. Absolute quantification determines the input copy number, usually by relating the PCR signal to a standard curve. Relative quantification relates the PCR signal of the target transcript in a treatment group to that of another sample such as an untreated control. The 2(-Delta Delta C(T)) method is a convenient way to analyze the relative changes in gene expression from real-time quantitative PCR experiments. The purpose of this report is to present the derivation, assumptions, and applications of the 2(-Delta Delta C(T)) method. In addition, we present the derivation and applications of two variations of the 2(-Delta Delta C(T)) method that may be useful in the analysis of real-time, quantitative PCR data. Copyright 2001 Elsevier Science (USA).
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            A SIMPLE METHOD OF ESTIMATING FIFTY PER CENT ENDPOINTS12

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              Molecular mechanism and physiological functions of clathrin-mediated endocytosis.

              Clathrin-mediated endocytosis is the endocytic portal into cells through which cargo is packaged into vesicles with the aid of a clathrin coat. It is fundamental to neurotransmission, signal transduction and the regulation of many plasma membrane activities and is thus essential to higher eukaryotic life. Morphological stages of vesicle formation are mirrored by progression through various protein modules (complexes). The process involves the formation of a putative FCH domain only (FCHO) initiation complex, which matures through adaptor protein 2 (AP2)-dependent cargo selection, and subsequent coat building, dynamin-mediated scission and finally auxilin- and heat shock cognate 70 (HSC70)-dependent uncoating. Some modules can be used in other pathways, and additions or substitutions confer cell specificity and adaptability.
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                Author and article information

                Contributors
                Journal
                Front Cell Dev Biol
                Front Cell Dev Biol
                Front. Cell Dev. Biol.
                Frontiers in Cell and Developmental Biology
                Frontiers Media S.A.
                2296-634X
                16 December 2022
                2022
                : 10
                : 1075364
                Affiliations
                [1] 1 The Shmunis School of Biomedicine and Cancer Research , George S. Wise Faculty of Life Sciences , Tel Aviv University , Tel Aviv-Yafo, Israel
                [2] 2 Department of Virology , The Kimron Veterinary Institute , Beit Dagan, Israel
                Author notes

                Edited by: Boris Fichtman, Bar-Ilan University, Israel

                Reviewed by: Jiann-Ruey Hong, National Cheng Kung University, Taiwan

                Maitreyi Shivkumar, De Montfort University, United Kingdom

                *Correspondence: Marcelo Ehrlich, marceloe@ 123456tauex.tau.ac.il ; Eran Bacharach, eranba@ 123456tauex.tau.ac.il

                This article was submitted to Membrane Traffic, a section of the journal Frontiers in Cell and Developmental Biology

                Article
                1075364
                10.3389/fcell.2022.1075364
                9809973
                36605723
                769c7619-608e-4d73-a4f2-e4eb4ea78e6a
                Copyright © 2022 Abu Rass, Kembou-Ringert, Zamostiano, Eldar, Ehrlich and Bacharach.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 20 October 2022
                : 05 December 2022
                Funding
                Funded by: Israel Science Foundation , doi 10.13039/501100003977;
                Funded by: United States—Israel Binational Agricultural Research and Development Fund , doi 10.13039/100006031;
                Categories
                Cell and Developmental Biology
                Original Research

                tilapia lake virus,entry,dynamin,cholesterol,endocytosis,cytoskeleton,crm1

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