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      Signaling proteins in HSC fate determination are unequally segregated during asymmetric cell division

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          Abstract

          Ugale et al. demonstrate that CDC42, ERK, and mTORC1 signaling are polarized in premitotic hematopoietic stem cells and unequally segregated during asymmetric cell division. A CDC42/ERK/mTORC1 pathway maintains HSC polarity and balances symmetric and asymmetric cell division.

          Abstract

          Hematopoietic stem cells (HSCs) continuously replenish mature blood cells with limited lifespans. To maintain the HSC compartment while ensuring output of differentiated cells, HSCs undergo asymmetric cell division (ACD), generating two daughter cells with different fates: one will proliferate and give rise to the differentiated cells’ progeny, and one will return to quiescence to maintain the HSC compartment. A balance between MEK/ERK and mTORC1 pathways is needed to ensure HSC homeostasis. Here, we show that activation of these pathways is spatially segregated in premitotic HSCs and unequally inherited during ACD. A combination of genetic and chemical perturbations shows that an ERK-dependent mechanism determines the balance between pathways affecting polarity, proliferation, and metabolism, and thus determines the frequency of asymmetrically dividing HSCs. Our data identify druggable targets that modulate HSC fate determination at the level of asymmetric division.

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          FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data.

          The number of markers measured in both flow and mass cytometry keeps increasing steadily. Although this provides a wealth of information, it becomes infeasible to analyze these datasets manually. When using 2D scatter plots, the number of possible plots increases exponentially with the number of markers and therefore, relevant information that is present in the data might be missed. In this article, we introduce a new visualization technique, called FlowSOM, which analyzes Flow or mass cytometry data using a Self-Organizing Map. Using a two-level clustering and star charts, our algorithm helps to obtain a clear overview of how all markers are behaving on all cells, and to detect subsets that might be missed otherwise. R code is available at https://github.com/SofieVG/FlowSOM and will be made available at Bioconductor.
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            Lysosomes as dynamic regulators of cell and organismal homeostasis

            Exciting new discoveries have transformed the view of the lysosome from a static organelle dedicated to the disposal and recycling of cellular waste to a highly dynamic structure that mediates the adaptation of cell metabolism to environmental cues. Lysosome-mediated signalling pathways and transcription programmes are able to sense the status of cellular metabolism and control the switch between anabolism and catabolism by regulating lysosomal biogenesis and autophagy. The lysosome also extensively communicates with other cellular structures by exchanging content and information and by establishing membrane contact sites. It is now clear that lysosome positioning is a dynamically regulated process and a crucial determinant of lysosomal function. Finally, growing evidence indicates that the role of lysosomal dysfunction in human diseases goes beyond rare inherited diseases, such as lysosomal storage disorders, to include common neurodegenerative and metabolic diseases, as well as cancer. Together, these discoveries highlight the lysosome as a regulatory hub for cellular and organismal homeostasis, and an attractive therapeutic target for a broad variety of disease conditions.
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              RAS-targeted therapies: is the undruggable drugged?

              RAS ( KRAS , NRAS and HRAS ) is the most frequently mutated gene family in cancers, and, consequently, investigators have sought an effective RAS inhibitor for more than three decades. Even 10 years ago, RAS inhibitors were so elusive that RAS was termed ‘undruggable’. Now, with the success of allele-specific covalent inhibitors against the most frequently mutated version of RAS in non-small-cell lung cancer, KRAS G12C , we have the opportunity to evaluate the best therapeutic strategies to treat RAS-driven cancers. Mutation-specific biochemical properties, as well as the tissue of origin, are likely to affect the effectiveness of such treatments. Currently, direct inhibition of mutant RAS through allele-specific inhibitors provides the best therapeutic approach. Therapies that target RAS-activating pathways or RAS effector pathways could be combined with these direct RAS inhibitors, immune checkpoint inhibitors or T cell-targeting approaches to treat RAS -mutant tumours. Here we review recent advances in therapies that target mutant RAS proteins and discuss the future challenges of these therapies, including combination strategies.
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                Author and article information

                Contributors
                Role: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: ValidationRole: VisualizationRole: Writing - original draftRole: Writing - review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: VisualizationRole: Writing - original draftRole: Writing - review & editing
                Role: Data curationRole: Formal analysisRole: SoftwareRole: ValidationRole: Visualization
                Role: InvestigationRole: Methodology
                Role: ConceptualizationRole: Funding acquisitionRole: Project administrationRole: SupervisionRole: Writing - review & editing
                Journal
                J Cell Biol
                J Cell Biol
                jcb
                The Journal of Cell Biology
                Rockefeller University Press
                0021-9525
                1540-8140
                02 September 2024
                14 June 2024
                14 June 2024
                : 223
                : 9
                : e202310137
                Affiliations
                [1 ]Department of Microbiology, Max Perutz Labs Vienna, University of Vienna, Immunobiology and Genetics ( https://ror.org/03prydq77) , Vienna, Austria
                [2 ]Vienna BioCenter PhD Program, Doctoral School of the University of Vienna and Medical University of Vienna ( https://ror.org/03prydq77) , Vienna, Austria
                [3 ]HeartBeat.bio AG; , Vienna, Austria
                Author notes
                Correspondence to Manuela Baccarini: manuela.baccarini@ 123456univie.ac.at

                Disclosures: The authors declare no competing interests exist.

                E. Rebhan’s current affiliation is Salzkammergutklinikum Vöcklabruck, Department of Pathology, Vöcklabruck, Austria.

                Author information
                https://orcid.org/0009-0005-6553-987X
                https://orcid.org/0009-0002-5126-0622
                https://orcid.org/0000-0001-6145-1516
                https://orcid.org/0009-0006-3239-1351
                https://orcid.org/0000-0002-3033-391X
                Article
                jcb.202310137
                10.1083/jcb.202310137
                11178505
                38874393
                7478a4af-539e-4e69-9791-4bceb7652e27
                © 2024 Ugale et al.

                This article is available under a Creative Commons License (Attribution 4.0 International, as described at https://creativecommons.org/licenses/by/4.0/).

                History
                : 27 October 2023
                : 21 March 2024
                : 13 May 2024
                Funding
                Funded by: Austrian Science Fund, DOI http://dx.doi.org/10.13039/501100002428;
                Award ID: P 31744
                Funded by: Swedish Research Council, DOI http://dx.doi.org/10.13039/501100004359;
                Award ID: 2017-06394
                Funded by: University of Vienna, DOI http://dx.doi.org/10.13039/501100003065;
                Categories
                Article
                Polarity
                Stem Cells
                Cell Signaling

                Cell biology
                Cell biology

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