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      RNA helicase DDX3X modulates herpes simplex virus 1 nuclear egress

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          Abstract

          DDX3X is a mammalian RNA helicase that regulates RNA metabolism, cancers, innate immunity and several RNA viruses. We discovered that herpes simplex virus 1, a nuclear DNA replicating virus, redirects DDX3X to the nuclear envelope where it surprisingly modulates the exit of newly assembled viral particles. DDX3X depletion also leads to an accumulation of virions in intranuclear herniations. Mechanistically, we show that DDX3X physically and functionally interacts with the virally encoded nuclear egress complex at the inner nuclear membrane. DDX3X also binds to and stimulates the incorporation in mature particles of pUs3, a herpes kinase that promotes viral nuclear release across the outer nuclear membrane. Overall, the data highlights two unexpected roles for an RNA helicase during the passage of herpes simplex viral particles through the nuclear envelope. This reveals a highly complex interaction between DDX3X and viruses and provides new opportunities to target viral propagation.

          Abstract

          DDX3X, a mammalian RNA helicase, modulates herpes simplex virus 1 nuclear egress through cooperating with the viral nuclear egress machinery and the pUS3 viral kinase.

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          The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences

          The PRoteomics IDEntifications (PRIDE) database ( https://www.ebi.ac.uk/pride/ ) is the world's largest data repository of mass spectrometry-based proteomics data. PRIDE is one of the founding members of the global ProteomeXchange (PX) consortium and an ELIXIR core data resource. In this manuscript, we summarize the developments in PRIDE resources and related tools since the previous update manuscript was published in Nucleic Acids Research in 2019. The number of submitted datasets to PRIDE Archive (the archival component of PRIDE) has reached on average around 500 datasets per month during 2021. In addition to continuous improvements in PRIDE Archive data pipelines and infrastructure, the PRIDE Spectra Archive has been developed to provide direct access to the submitted mass spectra using Universal Spectrum Identifiers. As a key point, the file format MAGE-TAB for proteomics has been developed to enable the improvement of sample metadata annotation. Additionally, the resource PRIDE Peptidome provides access to aggregated peptide/protein evidences across PRIDE Archive. Furthermore, we will describe how PRIDE has increased its efforts to reuse and disseminate high-quality proteomics data into other added-value resources such as UniProt, Ensembl and Expression Atlas.
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            From unwinding to clamping - the DEAD box RNA helicase family.

            RNA helicases of the DEAD box family are present in all eukaryotic cells and in many bacteria and Archaea. These highly conserved enzymes are required for RNA metabolism from transcription to degradation and are therefore important players in gene expression. DEAD box proteins use ATP to unwind short duplex RNA in an unusual fashion and remodel RNA-protein complexes, but they can also function as ATP-dependent RNA clamps to provide nucleation centres that establish larger RNA-protein complexes. Structural, mechanistic and molecular biological studies have started to reveal how these conserved proteins can perform such diverse functions and how accessory proteins have a central role in their regulation.
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              Herpesviruses remodel host membranes for virus egress.

              Herpesviruses replicate their DNA and package this DNA into capsids in the nucleus. These capsids then face substantial obstacles to their release from cells. Unlike other DNA viruses, herpesviruses do not depend on disruption of nuclear and cytoplasmic membranes for their release. Enveloped particles are formed by budding through inner nuclear membranes, and then these perinuclear enveloped particles fuse with outer nuclear membranes. Unenveloped capsids in the cytoplasm are decorated with tegument proteins and then undergo secondary envelopment by budding into trans-Golgi network membranes, producing infectious particles that are released. In this Review, we describe the remodelling of host membranes that facilitates herpesvirus egress.
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                Author and article information

                Contributors
                roger.lippe@umontreal.ca
                Journal
                Commun Biol
                Commun Biol
                Communications Biology
                Nature Publishing Group UK (London )
                2399-3642
                1 February 2023
                1 February 2023
                2023
                : 6
                : 134
                Affiliations
                [1 ]GRID grid.411418.9, ISNI 0000 0001 2173 6322, Centre de recherche du CHU Sainte-Justine, ; Montreal, Quebec Canada
                [2 ]GRID grid.14848.31, ISNI 0000 0001 2292 3357, Institute for Research in Immunology and Cancer, , University of Montreal, ; Montreal, Quebec Canada
                [3 ]GRID grid.14848.31, ISNI 0000 0001 2292 3357, Department of Chemistry, , University of Montreal, ; Montreal, Quebec Canada
                [4 ]GRID grid.14848.31, ISNI 0000 0001 2292 3357, Department of Pathology and Cell biology, , University of Montreal, ; Montreal, Quebec Canada
                Author information
                http://orcid.org/0000-0002-4039-3131
                http://orcid.org/0000-0001-5066-3070
                Article
                4522
                10.1038/s42003-023-04522-w
                9892522
                36725983
                69d5664d-319f-4ec3-a609-f00312fa6fc0
                © The Author(s) 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 30 September 2022
                : 23 January 2023
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100000024, Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada);
                Award ID: MOP 82921
                Award ID: PJT-178115
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100000196, Canada Foundation for Innovation (Fondation canadienne pour l'innovation);
                Funded by: FundRef https://doi.org/10.13039/501100000156, Fonds de Recherche du Québec - Santé (Fonds de la recherche en sante du Quebec);
                Funded by: FundRef https://doi.org/10.13039/100008762, Genome Canada (Génome Canada);
                Funded by: Sainte-Justine Foundation IRICoR Genome Quebec
                Categories
                Article
                Custom metadata
                © The Author(s) 2023

                herpes virus,cellular microbiology
                herpes virus, cellular microbiology

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