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      Epigenetic targeting of autophagy for cancer: DNA and RNA methylation

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          Abstract

          Autophagy, a crucial cellular mechanism responsible for degradation and recycling of intracellular components, is modulated by an intricate network of molecular signals. Its paradoxical involvement in oncogenesis, acting as both a tumor suppressor and promoter, has been underscored in recent studies. Central to this regulatory network are the epigenetic modifications of DNA and RNA methylation, notably the presence of N6-methyldeoxyadenosine (6mA) in genomic DNA and N6-methyladenosine (m6A) in eukaryotic mRNA. The 6mA modification in genomic DNA adds an extra dimension of epigenetic regulation, potentially impacting the transcriptional dynamics of genes linked to autophagy and, especially, cancer. Conversely, m6A modification, governed by methyltransferases and demethylases, influences mRNA stability, processing, and translation, affecting genes central to autophagic pathways. As we delve deeper into the complexities of autophagy regulation, the importance of these methylation modifications grows more evident. The interplay of 6mA, m6A, and autophagy points to a layered regulatory mechanism, illuminating cellular reactions to a range of conditions. This review delves into the nexus between DNA 6mA and RNA m6A methylation and their influence on autophagy in cancer contexts. By closely examining these epigenetic markers, we underscore their promise as therapeutic avenues, suggesting novel approaches for cancer intervention through autophagy modulation.

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          Most cited references176

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          DNA methylation and its basic function.

          In the mammalian genome, DNA methylation is an epigenetic mechanism involving the transfer of a methyl group onto the C5 position of the cytosine to form 5-methylcytosine. DNA methylation regulates gene expression by recruiting proteins involved in gene repression or by inhibiting the binding of transcription factor(s) to DNA. During development, the pattern of DNA methylation in the genome changes as a result of a dynamic process involving both de novo DNA methylation and demethylation. As a consequence, differentiated cells develop a stable and unique DNA methylation pattern that regulates tissue-specific gene transcription. In this chapter, we will review the process of DNA methylation and demethylation in the nervous system. We will describe the DNA (de)methylation machinery and its association with other epigenetic mechanisms such as histone modifications and noncoding RNAs. Intriguingly, postmitotic neurons still express DNA methyltransferases and components involved in DNA demethylation. Moreover, neuronal activity can modulate their pattern of DNA methylation in response to physiological and environmental stimuli. The precise regulation of DNA methylation is essential for normal cognitive function. Indeed, when DNA methylation is altered as a result of developmental mutations or environmental risk factors, such as drug exposure and neural injury, mental impairment is a common side effect. The investigation into DNA methylation continues to show a rich and complex picture about epigenetic gene regulation in the central nervous system and provides possible therapeutic targets for the treatment of neuropsychiatric disorders.
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            A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation

            N 6-methyladenosine (m6A) is the most prevalent and reversible internal modification in mammalian messenger and non-coding RNAs. We report here that human METTL14 catalyzes m6A RNA methylation. Together with METTL3, the only previously known m6A methyltransferase, these two proteins form a stable heterodimer core complex of METTL3-14 that functions in cellular m6A deposition on mammalian nuclear RNAs. WTAP, a mammalian splicing factor, can interact with this complex and affect this methylation.
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              Autophagy fights disease through cellular self-digestion.

              Autophagy, or cellular self-digestion, is a cellular pathway involved in protein and organelle degradation, with an astonishing number of connections to human disease and physiology. For example, autophagic dysfunction is associated with cancer, neurodegeneration, microbial infection and ageing. Paradoxically, although autophagy is primarily a protective process for the cell, it can also play a role in cell death. Understanding autophagy may ultimately allow scientists and clinicians to harness this process for the purpose of improving human health.
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                Author and article information

                Contributors
                URI : https://loop.frontiersin.org/people/2520143Role: Role:
                URI : https://loop.frontiersin.org/people/2565142Role: Role:
                URI : https://loop.frontiersin.org/people/2573047Role:
                Role:
                URI : https://loop.frontiersin.org/people/1595957Role:
                URI : https://loop.frontiersin.org/people/2413634Role: Role:
                Journal
                Front Oncol
                Front Oncol
                Front. Oncol.
                Frontiers in Oncology
                Frontiers Media S.A.
                2234-943X
                08 December 2023
                2023
                : 13
                : 1290330
                Affiliations
                [1] 1 Guangdong Province Key Laboratory of Biotechnology Drug Candidates, School of Life Sciences and Biopharmaceuticals, Guangdong Pharmaceutical University , Guangzhou, Guangdong, China
                [2] 2 School of Health Sciences, Guangzhou Xinhua University , Guangzhou, Guangdong, China
                Author notes

                Edited by: Fabio Caradonna, University of Palermo, Italy

                Reviewed by: Kamalika Mojumdar, University of Texas MD Anderson Cancer Center, United States

                Chang Gu, Tongji University, China

                Wuliang Wang, Second Affiliated Hospital of Zhengzhou University, China

                *Correspondence: Huaqin Li, huaqinli1118@ 123456163.com ; Wenmei Wu, wuwenmei@ 123456gdpu.edu.cn
                Article
                10.3389/fonc.2023.1290330
                10749975
                38148841
                615a6f40-6352-4646-9f11-2d8f26b06730
                Copyright © 2023 Lin, Zhao, Zheng, Zhang, Li and Wu

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 07 September 2023
                : 28 November 2023
                Page count
                Figures: 3, Tables: 1, Equations: 0, References: 176, Pages: 15, Words: 7163
                Funding
                The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This work was supported by Science and Technology Projects in Guangzhou (Grant # 2023A04J0862), funding by high-level talent introduction into Guangdong Pharmaceutical University (Grant # 51304043013) and Guangdong Province College Students Innovation and Entrepreneurship Training Program (Grant # 202210573044).
                Categories
                Oncology
                Review
                Custom metadata
                Molecular and Cellular Oncology

                Oncology & Radiotherapy
                6ma methylation,m6a methylation,autophagy,cancers,therapy
                Oncology & Radiotherapy
                6ma methylation, m6a methylation, autophagy, cancers, therapy

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