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      Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress

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          Abstract

          Plants capture solar energy and atmospheric carbon dioxide (CO 2) through photosynthesis, which is the primary component of crop yield, and needs to be increased considerably to meet the growing global demand for food. Environmental stresses, which are increasing with climate change, adversely affect photosynthetic carbon metabolism (PCM) and limit yield of cereals such as rice ( Oryza sativa) that feeds half the world. To study the regulation of photosynthesis, we developed a rice gene regulatory network and identified a transcription factor HYR (HIGHER YIELD RICE) associated with PCM, which on expression in rice enhances photosynthesis under multiple environmental conditions, determining a morpho-physiological programme leading to higher grain yield under normal, drought and high-temperature stress conditions. We show HYR is a master regulator, directly activating photosynthesis genes, cascades of transcription factors and other downstream genes involved in PCM and yield stability under drought and high-temperature environmental stress conditions.

          Abstract

          Improving photosynthetic efficiency to increase crop yield is an important goal of plant breeders. Here, Ambavaram et al. identify a transcription factor that is a key regulator of photosynthetic carbon metabolism in rice and show that its overexpression enhances grain yield.

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          Most cited references42

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          Gene Ontology: tool for the unification of biology

          Genomic sequencing has made it clear that a large fraction of the genes specifying the core biological functions are shared by all eukaryotes. Knowledge of the biological role of such shared proteins in one organism can often be transferred to other organisms. The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing. To this end, three independent ontologies accessible on the World-Wide Web (http://www.geneontology.org) are being constructed: biological process, molecular function and cellular component.
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            COPPER ENZYMES IN ISOLATED CHLOROPLASTS. POLYPHENOLOXIDASE IN BETA VULGARIS.

            D ARNON (1949)
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              Genome-wide analysis of the ERF gene family in Arabidopsis and rice.

              Genes in the ERF family encode transcriptional regulators with a variety of functions involved in the developmental and physiological processes in plants. In this study, a comprehensive computational analysis identified 122 and 139 ERF family genes in Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa L. subsp. japonica), respectively. A complete overview of this gene family in Arabidopsis is presented, including the gene structures, phylogeny, chromosome locations, and conserved motifs. In addition, a comparative analysis between these genes in Arabidopsis and rice was performed. As a result of these analyses, the ERF families in Arabidopsis and rice were divided into 12 and 15 groups, respectively, and several of these groups were further divided into subgroups. Based on the observation that 11 of these groups were present in both Arabidopsis and rice, it was concluded that the major functional diversification within the ERF family predated the monocot/dicot divergence. In contrast, some groups/subgroups are species specific. We discuss the relationship between the structure and function of the ERF family proteins based on these results and published information. It was further concluded that the expansion of the ERF family in plants might have been due to chromosomal/segmental duplication and tandem duplication, as well as more ancient transposition and homing. These results will be useful for future functional analyses of the ERF family genes.
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                Author and article information

                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Pub. Group
                2041-1723
                31 October 2014
                : 5
                : 5302
                Affiliations
                [1 ]Virginia Bioinformatics Institute, Virginia Tech , Blacksburg, Virginia 24061, USA
                [2 ]Department of Crop, Soil, and Environmental Sciences, University of Arkansas , Fayetteville, Arkansas 72701, USA
                [3 ]School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center , Baton Rouge, Louisiana 70803, USA
                Author notes
                [*]

                Present Address: Metabolix Inc., 21 Erie Street, Cambridge, Massachusetts 02139, USA

                [†]

                Present Address: Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544, USA

                [‡]

                Present Address: Department of Crop Science, Botswana College of Agriculture, Gaborone, Botswana

                Article
                ncomms6302
                10.1038/ncomms6302
                4220491
                25358745
                5b92c2ef-6d99-4a6b-b9ba-35e3de06f964
                Copyright © 2014, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.

                This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

                History
                : 14 January 2014
                : 18 September 2014
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