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      Resolution of Conflicting Signals at the Single-Cell Level in the Regulation of Cyanobacterial Photosynthesis and Nitrogen Fixation

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          Abstract

          Unicellular, diazotrophic cyanobacteria temporally separate dinitrogen (N 2) fixation and photosynthesis to prevent inactivation of the nitrogenase by oxygen. This temporal segregation is regulated by a circadian clock with oscillating activities of N 2 fixation in the dark and photosynthesis in the light. On the population level, this separation is not always complete, since the two processes can overlap during transitions from dark to light. How do single cells avoid inactivation of nitrogenase during these periods? One possibility is that phenotypic heterogeneity in populations leads to segregation of the two processes. Here, we measured N 2 fixation and photosynthesis of individual cells using nanometer-scale secondary ion mass spectrometry (nanoSIMS) to assess both processes in a culture of the unicellular, diazotrophic cyanobacterium Crocosphaera watsonii during a dark-light and a continuous light phase. We compared single-cell rates with bulk rates and gene expression profiles. During the regular dark and light phases, C. watsonii exhibited the temporal segregation of N 2 fixation and photosynthesis commonly observed. However, N 2 fixation and photosynthesis were concurrently measurable at the population level during the subjective dark phase in which cells were kept in the light rather than returned to the expected dark phase. At the single-cell level, though, cells discriminated against either one of the two processes. Cells that showed high levels of photosynthesis had low nitrogen fixing activities, and vice versa. These results suggest that, under ambiguous environmental signals, single cells discriminate against either photosynthesis or nitrogen fixation, and thereby might reduce costs associated with running incompatible processes in the same cell.

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          Stochasticity in gene expression: from theories to phenotypes.

          Genetically identical cells exposed to the same environmental conditions can show significant variation in molecular content and marked differences in phenotypic characteristics. This variability is linked to stochasticity in gene expression, which is generally viewed as having detrimental effects on cellular function with potential implications for disease. However, stochasticity in gene expression can also be advantageous. It can provide the flexibility needed by cells to adapt to fluctuating environments or respond to sudden stresses, and a mechanism by which population heterogeneity can be established during cellular differentiation and development.
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            Methodological Underestimation of Oceanic Nitrogen Fixation Rates

            The two commonly applied methods to assess dinitrogen (N2) fixation rates are the 15N2-tracer addition and the acetylene reduction assay (ARA). Discrepancies between the two methods as well as inconsistencies between N2 fixation rates and biomass/growth rates in culture experiments have been attributed to variable excretion of recently fixed N2. Here we demonstrate that the 15N2-tracer addition method underestimates N2 fixation rates significantly when the 15N2 tracer is introduced as a gas bubble. The injected 15N2 gas bubble does not attain equilibrium with the surrounding water leading to a 15N2 concentration lower than assumed by the method used to calculate 15N2-fixation rates. The resulting magnitude of underestimation varies with the incubation time, to a lesser extent on the amount of injected gas and is sensitive to the timing of the bubble injection relative to diel N2 fixation patterns. Here, we propose and test a modified 15N2 tracer method based on the addition of 15N2-enriched seawater that provides an instantaneous, constant enrichment and allows more accurate calculation of N2 fixation rates for both field and laboratory studies. We hypothesise that application of N2 fixation measurements using this modified method will significantly reduce the apparent imbalances in the oceanic fixed-nitrogen budget.
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              Non-genetic individuality: chance in the single cell.

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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2013
                21 June 2013
                : 8
                : 6
                : e66060
                Affiliations
                [1 ]Department of Biogeochemistry, Helmholtz Centre for Ocean Research (GEOMAR), Kiel, Germany
                [2 ]Department of Biogeochemistry, Max Planck Institute for Marine Microbiology, Bremen, Germany
                [3 ]Department of Environmental Systems Science, Swiss Federal Institute of Technology, Zürich, Switzerland
                [4 ]Department of Environmental Microbiology, Eawag, Dübendorf, Switzerland
                University Paris South, France
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Conceived and designed the experiments: WM JL MK. Performed the experiments: WM TV. Analyzed the data: WM TV MK MA JL. Contributed reagents/materials/analysis tools: TV MK MA. Wrote the paper: WM MK MA JL.

                [¤a]

                Current address: Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA, USA

                [¤b]

                Current address: Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada

                Article
                PONE-D-13-04671
                10.1371/journal.pone.0066060
                3689712
                23805199
                53480a0f-a64a-4039-bb94-e4498693bbda
                Copyright @ 2013

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 22 January 2013
                : 1 May 2013
                Page count
                Pages: 7
                Funding
                This study was supported through the SOPRAN project ( http://sopran.pangaea.de) funded by the German Federal Ministry of Education and Research (BMBF). The authors thank the Max-Planck-Society for financial support ( http://www.mpg.de). MA was supported by a grant from the Swiss National Science Foundation ( http://www.snf.ch). Julie LaRoche was supported by a NSERC discovery grant. The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology
                Ecology
                Biogeochemistry
                Microbial Ecology
                Genomics
                Functional Genomics
                Genome Expression Analysis
                Microbiology
                Microbial Ecology
                Microbial Metabolism
                Microbial Physiology
                Earth Sciences
                Marine and Aquatic Sciences
                Oceanography
                Biological Oceanography
                Marine Biology

                Uncategorized
                Uncategorized

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