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      Consensus and conflict among ecological forecasts of Zika virus outbreaks in the United States

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          Abstract

          Ecologists are increasingly involved in the pandemic prediction process. In the course of the Zika outbreak in the Americas, several ecological models were developed to forecast the potential global distribution of the disease. Conflicting results produced by alternative methods are unresolved, hindering the development of appropriate public health forecasts. We compare ecological niche models and experimentally-driven mechanistic forecasts for Zika transmission in the continental United States. We use generic and uninformed stochastic county-level simulations to demonstrate the downstream epidemiological consequences of conflict among ecological models, and show how assumptions and parameterization in the ecological and epidemiological models propagate uncertainty and produce downstream model conflict. We conclude by proposing a basic consensus method that could resolve conflicting models of potential outbreak geography and seasonality. Our results illustrate the usually-undocumented margin of uncertainty that could emerge from using any one of these predictions without reservation or qualification. In the short term, ecologists face the task of developing better post hoc consensus that accurately forecasts spatial patterns of Zika virus outbreaks. Ultimately, methods are needed that bridge the gap between ecological and epidemiological approaches to predicting transmission and realistically capture both outbreak size and geography.

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          Evaluating predictive models of species’ distributions: criteria for selecting optimal models

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            Ecological niche modeling in Maxent: the importance of model complexity and the performance of model selection criteria.

            Maxent, one of the most commonly used methods for inferring species distributions and environmental tolerances from occurrence data, allows users to fit models of arbitrary complexity. Model complexity is typically constrained via a process known as L1 regularization, but at present little guidance is available for setting the appropriate level of regularization, and the effects of inappropriately complex or simple models are largely unknown. In this study, we demonstrate the use of information criterion approaches to setting regularization in Maxent, and we compare models selected using information criteria to models selected using other criteria that are common in the literature. We evaluate model performance using occurrence data generated from a known "true" initial Maxent model, using several different metrics for model quality and transferability. We demonstrate that models that are inappropriately complex or inappropriately simple show reduced ability to infer habitat quality, reduced ability to infer the relative importance of variables in constraining species' distributions, and reduced transferability to other time periods. We also demonstrate that information criteria may offer significant advantages over the methods commonly used in the literature.
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              Optimal temperature for malaria transmission is dramatically lower than previously predicted.

              The ecology of mosquito vectors and malaria parasites affect the incidence, seasonal transmission and geographical range of malaria. Most malaria models to date assume constant or linear responses of mosquito and parasite life-history traits to temperature, predicting optimal transmission at 31 °C. These models are at odds with field observations of transmission dating back nearly a century. We build a model with more realistic ecological assumptions about the thermal physiology of insects. Our model, which includes empirically derived nonlinear thermal responses, predicts optimal malaria transmission at 25 °C (6 °C lower than previous models). Moreover, the model predicts that transmission decreases dramatically at temperatures > 28 °C, altering predictions about how climate change will affect malaria. A large data set on malaria transmission risk in Africa validates both the 25 °C optimum and the decline above 28 °C. Using these more accurate nonlinear thermal-response models will aid in understanding the effects of current and future temperature regimes on disease transmission. © 2012 Blackwell Publishing Ltd/CNRS.
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                Author and article information

                Contributors
                ccarlson@sesync.org
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                21 March 2018
                21 March 2018
                2018
                : 8
                : 4921
                Affiliations
                [1 ]National Socio-Environmental Synthesis Center, University of Maryland, Annapolis, MD 21401 USA
                [2 ]ISNI 0000 0001 1955 1644, GRID grid.213910.8, Department of Biology, , Georgetown University, ; Washington, DC 20057 USA
                [3 ]ISNI 0000 0001 2181 7878, GRID grid.47840.3f, Department of Environmental Science, Policy and Management, , University of California Berkeley, ; Berkeley, CA 94720-3112 USA
                [4 ]ISNI 0000 0001 2181 7878, GRID grid.47840.3f, Department of Integrative Biology, , University of California Berkeley, ; Berkeley, CA 94720-3112 USA
                [5 ]ISNI 0000 0001 0723 4123, GRID grid.16463.36, Schools of Mathematical Sciences, , University of KwaZulu, ; Natal, South Africa
                [6 ]ISNI 0000 0001 0723 4123, GRID grid.16463.36, Schools of Life Sciences, , University of KwaZulu, ; Natal, South Africa
                [7 ]ISNI 0000 0004 1936 8091, GRID grid.15276.37, Department of Geography, , University of Florida, ; Gainesville, FL 32601 USA
                [8 ]ISNI 0000 0004 1936 8091, GRID grid.15276.37, Emerging Pathogens Institute, , University of Florida, ; Gainesville, FL 32610 USA
                Author information
                http://orcid.org/0000-0001-6960-8434
                http://orcid.org/0000-0001-5140-1646
                http://orcid.org/0000-0001-8784-9354
                http://orcid.org/0000-0002-4308-6321
                Article
                22989
                10.1038/s41598-018-22989-0
                5862882
                29563545
                4f044ded-53c9-4d7e-86eb-a55f923fc83c
                © The Author(s) 2018

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 8 June 2017
                : 2 March 2018
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