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      Identification of mutations in porcine STAT5A that contributes to the transcription of CISH

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          Abstract

          Identification of causative genes or genetic variants associated with phenotype traits benefits the genetic improvement of animals. CISH plays a role in immunity and growth, however, the upstream transcriptional factors of porcine CISH and the genetic variations in these factors remain unclear. In this study, we firstly identified the minimal core promoter of porcine CISH and confirmed the existence of STATx binding sites. Overexpression and RT-qPCR demonstrated STAT5A increased CISH transcriptional activity ( P < 0.01) and mRNA expression ( P < 0.01), while GATA1 inhibited CISH transcriptional activity ( P < 0.01) and the following mRNA expression ( P < 0.05 or P < 0.01). Then, the putative functional genetic variations of porcine STAT5A were screened and a PCR-SSCP was established for genotype g.508A>C and g.566C>T. Population genetic analysis showed the A allele frequency of g.508A>C and C allele frequency of g.566C>T was 0.61 and 0.94 in Min pigs, respectively, while these two alleles were fixed in the Landrace population. Statistical analysis showed that Min piglets with CC genotype at g.566C>T or Hap1: AC had higher 28-day body weight, 35-day body weight, and ADG than TC or Hap3: CT animals ( P < 0.05, P < 0.05). Further luciferase activity assay demonstrated that the activity of g.508A>C in the C allele was lower than the A allele ( P < 0.05). Collectively, the present study demonstrated that STAT5A positively regulated porcine CISH transcription, and SNP g.566C>T in the STAT5A was associated with the Min piglet growth trait.

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          Most cited references48

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          Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease

          Crohn’s disease (CD) and ulcerative colitis (UC), the two common forms of inflammatory bowel disease (IBD), affect over 2.5 million people of European ancestry with rising prevalence in other populations 1 . Genome-wide association studies (GWAS) and subsequent meta-analyses of CD and UC 2,3 as separate phenotypes implicated previously unsuspected mechanisms, such as autophagy 4 , in pathogenesis and showed that some IBD loci are shared with other inflammatory diseases 5 . Here we expand knowledge of relevant pathways by undertaking a meta-analysis of CD and UC genome-wide association scans, with validation of significant findings in more than 75,000 cases and controls. We identify 71 new associations, for a total of 163 IBD loci that meet genome-wide significance thresholds. Most loci contribute to both phenotypes, and both directional and balancing selection effects are evident. Many IBD loci are also implicated in other immune-mediated disorders, most notably with ankylosing spondylitis and psoriasis. We also observe striking overlap between susceptibility loci for IBD and mycobacterial infection. Gene co-expression network analysis emphasizes this relationship, with pathways shared between host responses to mycobacteria and those predisposing to IBD.
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            The JAK-STAT pathway: impact on human disease and therapeutic intervention.

            The Janus kinase (JAK)-signal transducer of activators of transcription (STAT) pathway is now recognized as an evolutionarily conserved signaling pathway employed by diverse cytokines, interferons, growth factors, and related molecules. This pathway provides an elegant and remarkably straightforward mechanism whereby extracellular factors control gene expression. It thus serves as a fundamental paradigm for how cells sense environmental cues and interpret these signals to regulate cell growth and differentiation. Genetic mutations and polymorphisms are functionally relevant to a variety of human diseases, especially cancer and immune-related conditions. The clinical relevance of the pathway has been confirmed by the emergence of a new class of therapeutics that targets JAKs.
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              Mechanisms of Jak/STAT signaling in immunity and disease.

              More than two decades ago, experiments on the antiviral mechanisms of IFNs led to the discovery of JAKs and their downstream effectors, the STAT proteins. This pathway has since become a paradigm for membrane-to-nucleus signaling and explains how a broad range of soluble factors, including cytokines and hormones, mediate their diverse functions. Jak/STAT research has not only impacted basic science, particularly in the context of intercellular communication and cell-extrinsic control of gene expression, it also has become a prototype for transition from bench to bedside, culminating in the development and clinical implementation of pathway-specific therapeutics. This brief review synthesizes our current understanding of Jak/STAT biology while taking stock of the lessons learned and the challenges that lie ahead.
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                Author and article information

                Contributors
                Journal
                Front Vet Sci
                Front Vet Sci
                Front. Vet. Sci.
                Frontiers in Veterinary Science
                Frontiers Media S.A.
                2297-1769
                17 January 2023
                2022
                : 9
                : 1090833
                Affiliations
                [1] 1College of Animal Science and Technology, Northeast Agricultural University , Harbin, China
                [2] 2State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences (CAAS) , Harbin, China
                [3] 3Lanxi Breeding Farm , Lanxi, China
                Author notes

                Edited by: Yalan Yang, Agricultural Genomics Institute at Shenzhen (CAAS), China

                Reviewed by: Lingyang Xu, Institute of Animal Sciences (CAAS), China; Xinyun Li, Huazhong Agricultural University, China

                *Correspondence: Buyue Niu ✉ niubuyue@ 123456neau.edu.cn

                This article was submitted to Livestock Genomics, a section of the journal Frontiers in Veterinary Science

                Article
                10.3389/fvets.2022.1090833
                9887310
                4bcc449e-b35a-44b6-8be1-b122fc4f4d19
                Copyright © 2023 Yao, Guo, Zhang, Chen, Gao, Xing, Yang, Wang, Di, Cai and Niu.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 06 November 2022
                : 28 December 2022
                Page count
                Figures: 6, Tables: 3, Equations: 1, References: 48, Pages: 12, Words: 7517
                Funding
                This study was supported by the Natural Science Foundation of Heilongjiang Province (LH2020C015) and the Foundation for Key Teacher of Northeast Agriculture University (19XG11).
                Categories
                Veterinary Science
                Original Research

                porcine,cish,stat5a,polymorphism,piglet growth trait
                porcine, cish, stat5a, polymorphism, piglet growth trait

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