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Abstract
Purpose
To identify the gene mutations causing X-linked infantile nystagmus in two Chinese
families (NYS003 and NYS008), of which the NYS003 family was assigned to the FERM
domain–containing 7 (
FRMD7) gene linked region in our previous study, and no mutations were found by direct
sequencing.
Methods
Two microsatellites, DXS1047 and DXS1001, were amplified using a PCR reaction for
the linkage study in the NYS008 family.
FRMD7 was sequenced and mutations were analyzed. Multiplex ligation-dependent probe amplification
(MLPA) was used to detect
FRMD7 mutations in the NYS003 family.
Results
The NYS008 family yielded a maximum logarithm of odds (LOD) score of 1.91 at θ=0 with
DXS1001.
FRMD7 sequencing showed a nucleotide change of c. 623A>G in exon7 of the patients’
FRMD7 gene, which was predicted to result in an H208R amino acid change. This novel mutation
was absent in 100 normal Han Chinese controls. No
FRMD7 gene mutations were detected by MLPA in the NYS003 family.
Conclusions
We identified a novel mutation, c. 623A>G (p. H208R), in a Han Chinese family with
infantile nystagmus. This mutation expands the mutation spectrum of
FRMD7 and contributes to the research on the molecular pathogenesis of
FRMD7.
We describe a new approach, based on the energy of non-local interactions, to assess protein structures. The method uses a very sensitive and accurate atomic mean force potential (AMFP) to calculate the non-local energy profile (NL-profile) of a proteins structure. Several protein models, built using the comparative modeling technique and containing several errors, were evaluated. These models exhibit a good stereochemistry and have been previously checked with different, widely used, methods that failed to detect the errors. The AMFP-derived energy profiles are able to correlate high scores with point errors and misalignments in the models. The point errors are frequently found in loops or regions of structural differences between the template and the target protein. The misalignments are clearly detected with very high scores. The performance of the method was also tested for the assessment of X-ray solved protein structures. In a data set of 143 well solved and non-redundant protein structures, we find that the average energy Z-scores, obtained from AMFP, increase as the resolution decreases. In the case of structures that have already been described as having an unusual stereochemistry, very high Z-scores are obtained. Moreover, energy calculations for some pairs of obsolete and replacement proteins always show higher Z-scores for the obsolete proteins. Finally, two particular cases show the usefulness of the profiles in the assessment of X-ray solved protein structures. First, the NL-profile of a protein structure refined in the incorrect space group has very high scores in several regions. One region has already been described to be out-of-register with the density map of the structure. The NL-profile of the re-refined structure with the correct space group is vastly improved. In the second case, the method is able to accurately point out disordered residues, even if the atoms of these residues do not violate the sum of the van der Waals radii. ANOLEA, the program used to calculate the NL-profile of a protein structure containing one or more chains is accessible through the World Wide Web at: http://www.fundp.ac.be/pub/ANOLEA.html. Copyright 1998 Academic Press Limited.
The mechanisms controlling axon guidance are of fundamental importance in understanding brain development. Growing corticospinal and somatosensory axons cross the midline in the medulla to reach their targets and thus form the basis of contralateral motor control and sensory input. The motor and sensory projections appeared uncrossed in patients with horizontal gaze palsy with progressive scoliosis (HGPPS). In patients affected with HGPPS, we identified mutations in the ROBO3 gene, which shares homology with roundabout genes important in axon guidance in developing Drosophila, zebrafish, and mouse. Like its murine homolog Rig1/Robo3, but unlike other Robo proteins, ROBO3 is required for hindbrain axon midline crossing.
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